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[183656_at]

Description C08A9.9 /REP_DB=WormBase Gene ID /WP=CE06791 /TR=Q17812 /GB=AAB53821.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 14      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 23.1
(0)
A 		3
(-3)
A 		15.3
(-1.2)
A 		43
(3)
A 		40
B 51.6
(0.2)
A 		13
(-2.8)
A 		11
(-3)
A 		88.3
(3)
A 		77
C 57.5
(2.8)
A 		12.5
(-2.9)
A 		11.9
(-3)
A 		58.9
(3)
A 		47
avr 44.1
(0.9) 		9.5
(-3) 		12.7
(-2.6) 		63.4
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 14.3
(0.1)
A 		13
(-0.5)
A 		10.7
(-1.6)
A 		12.1
(-1)
A 		20.4
(3)
A 		7.8
(-3)
A 		13
B 7
(-3)
A 		11.4
(-2.5)
A 		15
(-2.1)
A 		59.7
(3)
A 		11.9
(-2.4)
A 		25.6
(-0.9)
A 		53
C 59.4
(3)
A 		14.8
(-2.4)
A 		17.7
(-2.1)
A 		10
(-3)
A 		53.6
(2.3)
A 		58
(2.8)
A 		49
avr 26.9
(1.8) 		13.1
(-3) 		14.5
(-2.5) 		27.3
(1.9) 		28.6
(2.3) 		30.5
(3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 8.4
(3)
A 		0.7
(-3)
A 		4
(-0.4)
A 		6.3
(1.4)
A 		8
B 16.4
(2.1)
A 		3.2
(-2.8)
A 		2.6
(-3)
A 		18.8
(3)
A 		16
C 19
(3)
A 		3.6
(-3)
A 		4.2
(-2.8)
A 		9.9
(-0.5)
A 		15
avr 14.6
(3) 		2.5
(-3) 		3.6
(-2.5) 		11.7
(1.6) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 2.6
(-2)
A 		4.6
(0.9)
A 		2.3
(-2.4)
A 		3.1
(-1.3)
A 		6.1
(3)
A 		1.9
(-3)
A 		4
B 2.5
(-3)
A 		3.8
(-2.4)
A 		3.6
(-2.5)
A 		15.8
(3)
A 		4.8
(-2)
A 		9.6
(0.2)
A 		13
C 22
(3)
A 		4.5
(-2.3)
A 		4.5
(-2.3)
A 		2
(-3)
A 		17.3
(1.6)
A 		19.4
(2.2)
A 		20
avr 9
(1.9) 		4.3
(-2.3) 		3.5
(-3) 		7
(0.1) 		9.4
(2.2) 		10.3
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183656_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17446
Sequence Type Exemplar sequence
Representative Public ID C08A9.9 NCBI
Target Description C08A9.9 /REP_DB=WormBase Gene ID /WP=CE06791 /TR=Q17812 /GB=AAB53821.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078367(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078367 NCBI Caenorhabditis elegans C08A9.9 (C08A9.9) mRNA, complete cds. 11/11 None
SNAP00000037427 ENSEMBL cdna:SNAP chromosome:CEL140:X:17106518:17107653:-1 11/11 None
GENEFINDER00000037436 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17106518:17107653:-1 10/11 None
C08A9.9 ENSEMBL cdna:known chromosome:CEL140:X:17106518:17107653:-1 gene:C08A9.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17106517-17107653(-) 96.1 100.0
Public Domain and Genome References
Gene Title
Ensembl C08A9.9
Entrez Gene 182387 Entrez gene
SwissProt Q17812 EMBL-EBI
WormBase CE06791 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB53821 Hypothetical protein C08A9.9 [Caenorhabditis elegans] ref|NP_510768.1| C08A9.9 [Caenorhabditis elegans] 1.0E-153
blast AAB53821 Hypothetical protein C08A9.9 [Caenorhabditis elegans] ref|NP_510768.1| C08A9.9 [Caenorhabditis elegans] 1.0E-142
blast AAA82372 Hypothetical protein K09E3.5 [Caenorhabditis elegans] ref|NP_510769.1| K09E3.5 [Caenorhabditis elegans] 1.0E-55
blast AAB70937 Hypothetical protein C41H7.6 [Caenorhabditis elegans] ref|NP_494420.1| C41H7.6 [Caenorhabditis elegans] 1.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR005020 EMBL-EBI Protein of unknown function DUF278 1.0E-126
Pfam IPR005020 EMBL-EBI Protein of unknown function DUF278 3.0E-107
Pfam IPR005020 EMBL-EBI Protein of unknown function DUF278 3.3E-45
Sequence
Target Sequence 
>C. ELEGANS:183656_AT
aaacggactagtgtctgctgctcttatggaagatgacacgctcggagaagacacggagga
agacatcagttcggaggaagatgatgacattgtggttgtagatgagatcattcgcgttca
gagtccgagaagttgcattcaaaacgtgaagccccagcagtccgccagcagtccgccagc
agtccgccagtccgccatcgttacaccatcggcatctgagaataatcgcacttccaatgc
cgcgagcaatggtaagcaaacacattatctaactcaatcaaattttgacaatgctcccag
ctacgcaaccacacgaaaatttgcatcgaatatcacttctcaaattgatcgtctcttcag
caaaaatccggaaaaatccaagctcttcaaggatgttcttcagaaaactatcttgtcact
ggacgatccagaggcaactcacggaaattgctgtgacgtttttgaagaactctatgctgc
tgaggatcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACGGACTAGTGTCTGCTGCTCTT 573 125 429 Antisense
GATCATTCGCGTTCAGAGTCCGAGA 645 419 534 Antisense
TTCAAAACGTGAAGCCCCAGCAGTC 90 685 566 Antisense
ATCGTTACACCATCGGCATCTGAGA 423 35 625 Antisense
GAATAATCGCACTTCCAATGCCGCG 380 327 648 Antisense
AATTTTGACAATGCTCCCAGCTACG 497 173 709 Antisense
ATCGTCTCTTCAGCAAAAATCCGGA 656 33 776 Antisense
CAAGCTCTTCAAGGATGTTCTTCAG 544 185 807 Antisense
ACTATCTTGTCACTGGACGATCCAG 552 101 835 Antisense
GACGATCCAGAGGCAACTCACGGAA 147 379 850 Antisense
GAACTCTATGCTGCTGAGGATCACA 619 349 895 Antisense
Sequence Source Affymetrix Proprietary Database