[Home] | [Total List]

[183655_at]

Description F01G10.6 /REP_DB=WormBase Gene ID /WP=CE09168 /TR=O17764 /GB=CAB02894.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 0      4grp_high_8_8 > 46      6grp_highest_nonorm > 80      6grp_total > 08      4grp_total > 50      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 240
1 2 3 4 range
A 136.4
(-1.9)
P 		235.6
(1.1)
P 		301.1
(3)
P 		97.6
(-3)
A 		204
B 93.6
(-3)
P 		333.2
(3)
P 		261
(1.2)
P 		110.3
(-2.6)
P 		240
C 139
(-2.1)
P 		316.7
(3)
P 		275.6
(1.8)
P 		105.6
(-3)
A 		211
avr 123
(-2.4) 		295.2
(3) 		279.2
(2.5) 		104.5
(-3) 		191

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 176
1 2 3 4 5 6 range
A 337.7
(3)
P 		233.1
(-0.6)
P 		277.4
(0.9)
P 		277.5
(0.9)
P 		161.9
(-3)
P 		204.4
(-1.5)
P 		176
B 304.9
(3)
P 		200.6
(-1.8)
P 		286.9
(2.2)
P 		284
(2)
P 		175.8
(-3)
P 		206
(-1.6)
P 		129
C 230.8
(1.8)
P 		243.5
(2.7)
P 		162.7
(-3)
P 		243
(2.6)
P 		182
(-1.6)
P 		248.1
(3)
P 		85
avr 291.1
(3) 		225.7
(-0.3) 		242.3
(0.5) 		268.2
(1.8) 		173.2
(-3) 		219.5
(-0.6) 		118
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 49.7
(0.3)
P 		51.1
(0.4)
P 		78.7
(3)
P 		14.3
(-3)
A 		64
B 29.8
(-2.4)
P 		82.3
(3)
P 		60.5
(0.8)
P 		23.5
(-3)
P 		59
C 46
(-0.8)
P 		91.1
(2.6)
P 		96.1
(3)
P 		17.8
(-3)
A 		78
avr 41.8
(-0.7) 		74.8
(2.6) 		78.4
(3) 		18.5
(-3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 62.3
(-0.6)
P 		82.9
(3)
P 		60.4
(-1)
P 		70.4
(0.8)
P 		48.9
(-3)
P 		49.8
(-2.8)
P 		34
B 106.1
(3)
P 		66.8
(-3)
P 		69.7
(-2.6)
P 		75.2
(-1.7)
P 		71.4
(-2.3)
P 		76.8
(-1.5)
P 		39
C 85.5
(3)
P 		74.3
(1.5)
P 		41.4
(-3)
P 		48.9
(-2)
P 		58.9
(-0.6)
P 		83.1
(2.7)
P 		44
avr 84.6
(3) 		74.7
(0.8) 		57.2
(-3) 		64.8
(-1.3) 		59.7
(-2.5) 		69.9
(-0.2) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183655_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9388
Sequence Type Exemplar sequence
Representative Public ID F01G10.6 NCBI
Target Description F01G10.6 /REP_DB=WormBase Gene ID /WP=CE09168 /TR=O17764 /GB=CAB02894.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069471(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069471 NCBI Caenorhabditis elegans F01G10.6 (F01G10.6) mRNA, complete cds. 11/11 None
SNAP00000013155 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10226370:10227586:-1 11/11 None
GENEFINDER00000013168 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10226354:10227586:-1 9/11 None
F01G10.6 ENSEMBL cdna:known chromosome:CEL140:IV:10226370:10227586:-1 gene:F01G10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10226375-10227592(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F01G10.6
Entrez Gene 184067 Entrez gene
SwissProt O17764 EMBL-EBI
WormBase CE09168 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02894 Hypothetical protein F01G10.6 [Caenorhabditis elegans] ref|NP_501872.1| F01G10.6 [Caenorhabditis elegans] 1.0E-148
blast CAB02894 Hypothetical protein F01G10.6 [Caenorhabditis elegans] ref|NP_501872.1| F01G10.6 [Caenorhabditis elegans] 1.0E-141
blast CAE59905 Hypothetical protein CBG03389 [Caenorhabditis briggsae] 8.0E-96
blast CAE59905 Hypothetical protein CBG03389 [Caenorhabditis briggsae] 2.0E-89
Sequence
Target Sequence 
>C. ELEGANS:183655_AT
atgtctcactatggcttttggtaatccggatgccgttggcactaaccaagcaacaactac
atacttcgttcgtggttgccatagaactcttacaaatgcagtctctgaccgaacatcgat
gaacaatgcagatttttgtgaacaggacaatacttataaaatggctgatcgaaagggaaa
tatcgtaaatgtcaaaatgatggcaatgttctgtgagggtacagatctttgcaataattt
acaaattgattttaatagtcaaatgacgtgtgccaatcaaacaaataataatttgcttaa
taatgctccactgaactgttatgaatgtacacctagtgaaggctataactgtcatgaatc
caagtgcacaaagaaatattgtttaaaacaggaaatcaagttagacaacggctttcaaat
tgacaaaacatgctcaaacgtgaatatatttggagtcgacaattcatgtcaaacgcatga
tcttatcaccaatccaggaggtgtcgcagtcaaaaatcaattttctcgctgttactgtaa
ggataagcaattttgtaattctggaacttctattactattctcttttcatctgttatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCTCACTATGGCTTTTGGTAAT 86 49 222 Antisense
GCTTTTGGTAATCCGGATGCCGTTG 507 303 235 Antisense
GATGCCGTTGGCACTAACCAAGCAA 523 411 250 Antisense
ACTACATACTTCGTTCGTGGTTGCC 573 101 277 Antisense
TCGTGGTTGCCATAGAACTCTTACA 55 605 291 Antisense
AATGCAGTCTCTGACCGAACATCGA 372 163 316 Antisense
TAATGCTCCACTGAACTGTTATGAA 478 635 522 Antisense
GAAGGCTATAACTGTCATGAATCCA 555 333 559 Antisense
CCAATCCAGGAGGTGTCGCAGTCAA 178 277 710 Antisense
AAATCAATTTTCTCGCTGTTACTGT 624 115 735 Antisense
TACTATTCTCTTTTCATCTGTTATC 701 645 795 Antisense
Sequence Source Affymetrix Proprietary Database