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[183654_at]

Description F44E7.6 /REP_DB=WormBase Gene ID /WP=CE10406 /TR=O16251 /GB=AAC25791.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 33      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 2.8
(-1.7)
A 		4.2
(3)
A 		2.7
(-2)
A 		2.4
(-3)
A 		2
B 1.1
(-3)
A 		30.7
(2.1)
A 		35.6
(3)
P 		3
(-2.7)
A 		35
C 29.4
(-0.1)
A 		15.2
(-2.6)
A 		13.1
(-3)
A 		46.3
(3)
P 		33
avr 11.1
(-3) 		16.7
(2.5) 		17.1
(2.9) 		17.2
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 38.4
(3)
A 		1.4
(-3)
A 		3.8
(-2.6)
A 		17.4
(-0.4)
A 		14.1
(-0.9)
A 		20.1
(0)
A 		37
B 13
(-0.9)
A 		15.7
(-0.3)
A 		23.2
(1.4)
A 		30.8
(3)
A 		3.1
(-3)
A 		14.3
(-0.6)
A 		28
C 1.9
(-3)
A 		12.1
(0.9)
A 		2.3
(-2.8)
A 		17
(2.8)
A 		10.6
(0.3)
A 		17.5
(3)
A 		16
avr 17.8
(1.1) 		9.7
(-2.8) 		9.8
(-2.8) 		21.7
(3) 		9.3
(-3) 		17.3
(0.9) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1
(3)
A 		0.9
(2)
A 		0.7
(-0)
A 		0.4
(-3)
A 		1
B 0.4
(-3)
A 		7.6
(2.5)
A 		8.2
(3)
P 		0.6
(-2.8)
A 		8
C 9.7
(3)
A 		4.4
(-3)
A 		4.6
(-2.8)
A 		7.8
(0.8)
P 		5
avr 3.7
(0) 		4.3
(2.3) 		4.5
(3) 		2.9
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 7.1
(3)
A 		0.5
(-3)
A 		0.8
(-2.7)
A 		4.4
(0.5)
A 		4.3
(0.5)
A 		4.9
(1)
A 		7
B 4.5
(-0.2)
A 		5.2
(0.4)
A 		5.6
(0.7)
A 		8.2
(3)
A 		1.3
(-3)
A 		5.3
(0.5)
A 		7
C 0.7
(-2.9)
A 		3.7
(0.5)
A 		0.6
(-3)
A 		3.4
(0.2)
A 		3.4
(0.2)
A 		5.9
(3)
A 		5
avr 4.1
(0.5) 		3.1
(-1.5) 		2.3
(-3) 		5.3
(2.8) 		3
(-1.6) 		5.4
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183654_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11911
Sequence Type Exemplar sequence
Representative Public ID F44E7.6 NCBI
Target Description F44E7.6 /REP_DB=WormBase Gene ID /WP=CE10406 /TR=O16251 /GB=AAC25791.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072115(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072115 NCBI Caenorhabditis elegans F44E7.6 (F44E7.6) mRNA, complete cds. 11/11 None
SNAP00000006990 ENSEMBL cdna:SNAP chromosome:CEL140:V:5783911:5785381:-1 11/11 None
GENEFINDER00000006998 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5783911:5788054:-1 11/11 None
F44E7.6 ENSEMBL cdna:known chromosome:CEL140:V:5783911:5785153:-1 gene:F44E7.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5783910-5785153(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F44E7.6
Entrez Gene 185738 Entrez gene
SwissProt O16251 EMBL-EBI
WormBase CE10406 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC25791 Hypothetical protein F44E7.6 [Caenorhabditis elegans] ref|NP_504516.1| F44E7.6 [Caenorhabditis elegans] 0.0
blast AAC25792 Hypothetical protein F44E7.7 [Caenorhabditis elegans] ref|NP_504517.1| F44E7.7 [Caenorhabditis elegans] 0.0
blast CAE64570 Hypothetical protein CBG09321 [Caenorhabditis briggsae] 0.0
blast NP_504642 T05H4.2 [Caenorhabditis elegans] gb|AAB66009.1| Hypothetical protein T05H4.2 [Caenorhabditis elegans] 1.0E-139
blast NP_504642 T05H4.2 [Caenorhabditis elegans] gb|AAB66009.1| Hypothetical protein T05H4.2 [Caenorhabditis elegans] 1.0E-120
blast CAB07161 Hypothetical protein C06H5.1 [Caenorhabditis elegans] ref|NP_741646.1| C06H5.1 [Caenorhabditis elegans] 1.0E-116
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.8E-28
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 8.1E-9
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.8E-28
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 8.1E-9
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.8E-28
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 8.1E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000006998 11 20-42,80-100,107-129,139-161,168-190,200-219,260-282,297-319,331-353,358-377,390-412
Sequence
Target Sequence 
>C. ELEGANS:183654_AT
ttttcttgctattaaaggcgttcttgaatcaattggaatcttgtcggcaaaatcagtttt
gatcaattgggatgacacttatgaaattgctgaacttctgcaacacgttaagcctgaagt
tctggaagacttaacaattaaatgtcttggttccgaaagagaaaatctggtgggcctgga
acagtggaaaaaagcaaagaatctgaaattgtctaaagttccacatttttctattattgt
caagcatctcaatcacttcaaatctatgaacttcgactttgttggagaatctttctcaag
agatgacatcatcaagtttcgagatgaggttcttctaaaatcaacaaatttcgaatattt
tacttctgaaaacgtgaaattcagtgcaagactgctcgttaaagttttcgatctacactc
aactccaagttcatctggctcaattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCTTGCTATTAAAGGCGTTCTT 606 675 471 Antisense
GAAATTGCTGAACTTCTGCAACACG 670 363 553 Antisense
GCAACACGTTAAGCCTGAAGTTCTG 263 319 570 Antisense
GAGAAAATCTGGTGGGCCTGGAACA 168 381 629 Antisense
TTGTCTAAAGTTCCACATTTTTCTA 587 705 679 Antisense
TTTTTCTATTATTGTCAAGCATCTC 398 675 696 Antisense
AGCATCTCAATCACTTCAAATCTAT 236 79 713 Antisense
GAAATTCAGTGCAAGACTGCTCGTT 596 363 846 Antisense
GACTGCTCGTTAAAGTTTTCGATCT 358 375 860 Antisense
TTCGATCTACACTCAACTCCAAGTT 276 695 877 Antisense
ACTCCAAGTTCATCTGGCTCAATTG 372 99 892 Antisense
Sequence Source Affymetrix Proprietary Database