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[183653_at]

Description F41D9.2 /REP_DB=WormBase Gene ID /WP=CE10238 /TR=Q94223 /GB=AAB52606.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 22      6grp_highest_nonorm > 52      6grp_total > 12      4grp_total > 51      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 681
1 2 3 4 range
A 353.1
(-0.3)
P 		707
(3)
P 		573.2
(1.8)
P 		53.9
(-3)
M 		653
B 377.6
(-0.3)
P 		734.7
(3)
P 		572.3
(1.5)
P 		85.1
(-3)
A 		650
C 374.4
(-0.4)
P 		704.2
(3)
P 		564.4
(1.6)
P 		115.1
(-3)
A 		589
avr 368.4
(-0.3) 		715.3
(3) 		570
(1.6) 		84.7
(-3) 		631

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 571
1 2 3 4 5 6 range
A 763.2
(2.5)
P 		808.7
(3)
P 		680.2
(1.6)
P 		670.9
(1.6)
P 		600.4
(0.8)
P 		238.2
(-3)
P 		571
B 587.9
(1.6)
P 		690.7
(3)
P 		532.5
(0.9)
P 		498.4
(0.4)
P 		620.5
(2.1)
P 		238.5
(-3)
P 		452
C 663.3
(1.9)
P 		700.8
(2.5)
P 		735.6
(3)
P 		567.7
(0.4)
P 		651
(1.7)
P 		342.5
(-3)
P 		393
avr 671.5
(2.2) 		733.4
(3) 		649.4
(1.9) 		579
(1) 		624
(1.6) 		273.1
(-3) 		460
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 195
1 2 3 4 range
A 128.6
(2)
P 		153.5
(3)
P 		149.9
(2.9)
P 		7.9
(-3)
M 		146
B 120.4
(0.8)
P 		181.4
(3)
P 		132.6
(1.2)
P 		18.1
(-3)
A 		163
C 123.9
(0.4)
P 		202.5
(3)
P 		196.7
(2.8)
P 		19.4
(-3)
A 		183
avr 124.3
(1) 		179.1
(3) 		159.7
(2.3) 		15.1
(-3) 		164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 230
1 2 3 4 5 6 range
A 140.7
(-0.8)
P 		287.6
(3)
P 		148.1
(-0.6)
P 		170.2
(-0.1)
P 		181.2
(0.2)
P 		58
(-3)
P 		230
B 204.5
(1.2)
P 		229.9
(2.2)
P 		129.3
(-1.5)
P 		132
(-1.4)
P 		252.1
(3)
P 		89
(-3)
P 		163
C 245.8
(3)
P 		213.8
(1.5)
P 		187.2
(0.3)
P 		114.2
(-3)
P 		210.7
(1.4)
P 		114.7
(-3)
P 		132
avr 197
(1.2) 		243.8
(3) 		154.9
(-0.4) 		138.8
(-1) 		214.7
(1.9) 		87.2
(-3) 		157
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183653_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16722
Sequence Type Exemplar sequence
Representative Public ID F41D9.2 NCBI
Target Description F41D9.2 /REP_DB=WormBase Gene ID /WP=CE10238 /TR=Q94223 /GB=AAB52606.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077021(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077021 NCBI Caenorhabditis elegans F41D9.2 (F41D9.2) mRNA, complete cds. 11/11 None
GENEFINDER00000031101 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8382826:8392518:-1 11/11 None
SNAP00000031094 ENSEMBL cdna:SNAP chromosome:CEL140:X:8383362:8384261:-1 9/11 None
F41D9.2 ENSEMBL cdna:known chromosome:CEL140:X:8382826:8384261:-1 gene:F41D9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8382824-8384260(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41D9.2
Entrez Gene 185612 Entrez gene
SwissProt Q94223 EMBL-EBI
WormBase CE10238 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6584 catecholamine metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4500 dopamine beta-monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAV28344 Wrapper/rega-1/klingon homolog protein 1, isoform e [Caenorhabditis elegans] ref|NP_001024651.1| Wrapper/Rega-1/Klingon homolog family member (wrk-1) [Caenorhabditis elegans] 0.0
blast AAM54179 Wrapper/rega-1/klingon homolog protein 1, isoform b [Caenorhabditis elegans] ref|NP_001024648.1| Wrapper/Rega-1/Klingon homolog family member (wrk-1) [Caenorhabditis elegans] 0.0
blast AAL60234 immunoglobulin domain-containing protein WRK-1B [Caenorhabditis elegans] 0.0
blast AAB52606 Hypothetical protein F41D9.2 [Caenorhabditis elegans] ref|NP_509422.1| F41D9.2 [Caenorhabditis elegans] 3.0E-87
blast CAE74892 Hypothetical protein CBG22757 [Caenorhabditis briggsae] 2.0E-79
blast AAB52606 Hypothetical protein F41D9.2 [Caenorhabditis elegans] ref|NP_509422.1| F41D9.2 [Caenorhabditis elegans] 4.0E-66
blast CAE74892 Hypothetical protein CBG22757 [Caenorhabditis briggsae] 3.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR005018 EMBL-EBI DOMON domain 6.4E-38
Pfam IPR005018 EMBL-EBI DOMON domain 6.4E-38
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.5E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.7E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.6E-7
Pfam IPR005018 EMBL-EBI DOMON domain 2.7E-35
Sequence
Target Sequence 
>C. ELEGANS:183653_AT
aatcaactccgtgtacattcgtaaccaatggtcagcaaatcacatatggtgttcgcggaa
acacaattcatttccgggttgtcttgacgggaattccacctactggatctggatggactg
ctattggattcgggaatagtatgttctctggtctcgacgtgattgtggttcgagtcctca
atggaagagttattgtgacggatgagtttgttcgcggattccagtcaccagttccagata
gacaaaacaacgtccaagtgtacggacttcgatatgaaaatggagttgtcgtagcttcat
tctcaagatcagtattttcaacagaacaaatggacgccaacctttcaggatgctctccat
ggaagttctccgtgggtttgaaccgaatgagtccacaaggtcacctgtttcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCAACTCCGTGTACATTCGTAAC 312 171 53 Antisense
AATTCATTTCCGGGTTGTCTTGACG 97 175 117 Antisense
GGGAATTCCACCTACTGGATCTGGA 471 493 141 Antisense
TATGTTCTCTGGTCTCGACGTGATT 269 657 192 Antisense
GACGTGATTGTGGTTCGAGTCCTCA 341 377 208 Antisense
GACGGATGAGTTTGTTCGCGGATTC 401 375 249 Antisense
ATTCCAGTCACCAGTTCCAGATAGA 631 3 270 Antisense
AGTTGTCGTAGCTTCATTCTCAAGA 259 65 336 Antisense
CAAATGGACGCCAACCTTTCAGGAT 223 191 379 Antisense
GGATGCTCTCCATGGAAGTTCTCCG 498 513 400 Antisense
GAGTCCACAAGGTCACCTGTTTCAC 670 399 441 Antisense
Sequence Source Affymetrix Proprietary Database