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[183652_at]

Description K01A2.2 /REP_DB=WormBase Gene ID /WP=CE19511 /TR=Q9TZ51 /GB=AAC69504.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 85      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 48      6grp_total > 75      4grp_total > 05      6grp_highest_sub > In      6grp_cgc > 57      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8415
1 2 3 4 range
A 3785.8
(-1.3)
P 		1747.2
(-2.8)
P 		1416.9
(-3)
P 		9828.6
(3)
P 		8412
B 3587
(-0.8)
P 		1646.5
(-2.8)
P 		1413.9
(-3)
P 		7393.1
(3)
P 		5979
C 4218.3
(-0.5)
P 		1679.7
(-2.8)
P 		1505
(-3)
P 		8101.3
(3)
P 		6596
avr 3863.7
(-0.9) 		1691.1
(-2.8) 		1445.3
(-3) 		8441
(3) 		6996

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2724
1 2 3 4 5 6 range
A 3522
(-2.6)
P 		3377.3
(-3)
P 		5464.6
(3)
P 		4193
(-0.7)
P 		4061.6
(-1)
P 		4670.8
(0.7)
P 		2087
B 3268.8
(-3)
P 		4288.7
(0)
P 		3738.6
(-1.6)
P 		3959.2
(-1)
P 		4446.5
(0.5)
P 		5298.9
(3)
P 		2030
C 2995.6
(-3)
P 		4096
(-0.6)
P 		4032.9
(-0.7)
P 		3904.7
(-1)
P 		3911.8
(-1)
P 		5719.3
(3)
P 		2724
avr 3262.1
(-3) 		3920.7
(-1) 		4412
(0.5) 		4019
(-0.7) 		4140
(-0.3) 		5229.7
(3) 		1968
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1248
1 2 3 4 range
A 1378.4
(2.7)
P 		379.3
(-3)
P 		370.4
(-3)
P 		1438.7
(3)
P 		1068
B 1143.9
(0.9)
P 		406.6
(-2.6)
P 		327.6
(-3)
P 		1575.5
(3)
P 		1248
C 1396.4
(3)
P 		482.9
(-3)
P 		524.5
(-2.7)
P 		1366
(2.8)
P 		914
avr 1306.2
(2.1) 		422.9
(-2.9) 		407.5
(-3) 		1460.1
(3) 		1053

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1327
1 2 3 4 5 6 range
A 649.3
(-3)
P 		1201.1
(2.7)
P 		1190.1
(2.6)
P 		1063.5
(1.3)
P 		1225.6
(3)
P 		1137.2
(2.1)
P 		576
B 1137.4
(-1.7)
P 		1427.5
(-0.1)
P 		907.9
(-3)
P 		1048.6
(-2.2)
P 		1806.5
(2)
P 		1976
(3)
P 		1068
C 1110.3
(-1.3)
P 		1249.8
(-0.5)
P 		1026.4
(-1.7)
P 		785.2
(-3)
P 		1265.8
(-0.4)
P 		1914.6
(3)
P 		1129
avr 965.7
(-3) 		1292.8
(-0.2) 		1041.5
(-2.4) 		965.8
(-3) 		1432.6
(0.9) 		1675.9
(3) 		710
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183652_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5259
Sequence Type Exemplar sequence
Representative Public ID K01A2.2 NCBI
Target Description K01A2.2 /REP_DB=WormBase Gene ID /WP=CE19511 /TR=Q9TZ51 /GB=AAC69504.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061307(11), NM_182191(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061307 NCBI Caenorhabditis elegans Fatty Acid/Retinol binding protein family member (far-7) (far-7) mRNA, complete cds. 11/11 None
NM_182191 NCBI Caenorhabditis elegans Fatty Acid/Retinol binding protein family member (far-7) (far-7) mRNA, complete cds. 11/11 None
SNAP00000016837 ENSEMBL cdna:SNAP chromosome:CEL140:II:319821:321027:1 11/11 None
GENEFINDER00000016846 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:319821:321027:1 11/11 None
K01A2.2a.2 ENSEMBL cdna:known chromosome:CEL140:II:319804:321093:1 gene:K01A2.2 11/11 None
K01A2.2a.1 ENSEMBL cdna:known chromosome:CEL140:II:319806:321109:1 gene:K01A2.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
K01A2.2b 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:319820-321027(+) 100.0 100.0
Public Domain and Genome References
Ensembl K01A2.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69504 Fatty acid/retinol binding protein protein 7, isoform a [Caenorhabditis elegans] ref|NP_493708.1| Fatty Acid/Retinol binding protein family member (far-7) [Caenorhabditis elegans] 3.0E-74
blast CAE62864 Hypothetical protein CBG07047 [Caenorhabditis briggsae] 2.0E-66
Protein Domains
Database ID Description E-Value
Pfam IPR008632 EMBL-EBI Nematode fatty acid retinoid binding 9.7E-8
Sequence
Target Sequence 
>C. ELEGANS:183652_AT
tgaacaactcgagttctcctcatcaattaccgctgacgagaagccagttcttcatgaggt
attccaaaagcattcatgtttctcacaatgtggtgaaatgattgacgaggtctcgaaaaa
gcatccagaattgggaaaacggttggcaactgtgttggaggggaacaagaaacgtttgga
tggtttgagcccggctgctgttgagtatgccaagaagctcatacacatggtaaccaccac
cttgtgctccttaaccgtcggaaaaccaattgatgatgcagatgcaaaacgtcttcacca
ggaattccaaagcctatcttcagaagatcaggctgcgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAACAACTCGAGTTCTCCTCATCA 531 573 60 Antisense
TCCTCATCAATTACCGCTGACGAGA 569 591 76 Antisense
AAGCCAGTTCTTCATGAGGTATTCC 296 149 100 Antisense
TCCAAAAGCATTCATGTTTCTCACA 693 587 122 Antisense
GACGAGGTCTCGAAAAAGCATCCAG 265 379 163 Antisense
ACGTTTGGATGGTTTGAGCCCGGCT 657 91 231 Antisense
CCCGGCTGCTGTTGAGTATGCCAAG 432 259 249 Antisense
ACACATGGTAACCACCACCTTGTGC 706 109 282 Antisense
GATGCAAAACGTCTTCACCAGGAAT 84 391 340 Antisense
GGAATTCCAAAGCCTATCTTCAGAA 491 533 360 Antisense
ATCTTCAGAAGATCAGGCTGCGCTG 41 31 375 Antisense
Sequence Source Affymetrix Proprietary Database