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[183651_at]

Description C03G6.8 /REP_DB=WormBase Gene ID /WP=CE07882 /TR=O01448 /GB=AAB52308.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 60      6grp_total > 61      4grp_total > 14      6grp_cgc > 50      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 84.8
(-0.7)
P 		44.1
(-3)
A 		73.2
(-1.4)
A 		152.6
(3)
P 		109
B 123.4
(3)
P 		92.8
(-0.3)
A 		67.6
(-3)
A 		75.5
(-2.2)
P 		56
C 143
(2)
P 		73.8
(-3)
A 		82.9
(-2.3)
P 		156.3
(3)
P 		83
avr 117.1
(1.9) 		70.2
(-3) 		74.6
(-2.5) 		128.1
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 107.5
(1)
P 		69
(-2)
P 		69.4
(-1.9)
P 		129.6
(2.6)
P 		134.6
(3)
P 		55.1
(-3)
P 		80
B 136.3
(3)
P 		110.9
(1.3)
P 		110.9
(1.3)
P 		116.6
(1.6)
P 		119.7
(1.9)
P 		49
(-3)
P 		87
C 96.4
(0.1)
P 		114.1
(0.8)
P 		146
(2.1)
P 		168.2
(3)
P 		66.9
(-1.1)
P 		20.2
(-3)
A 		148
avr 113.4
(1.5) 		98
(0.5) 		108.8
(1.2) 		138.1
(3) 		107.1
(1.1) 		41.4
(-3) 		97
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 30.9
(3)
P 		9.6
(-3)
A 		19.1
(-0.3)
A 		22.3
(0.6)
P 		21
B 39.3
(3)
P 		22.9
(-1.2)
A 		15.7
(-3)
A 		16.1
(-2.9)
P 		24
C 47.3
(3)
P 		21.2
(-3)
A 		28.9
(-1.2)
P 		26.4
(-1.8)
P 		26
avr 39.2
(3) 		17.9
(-3) 		21.2
(-2.1) 		21.6
(-2) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 19.8
(-1.6)
P 		24.5
(-0.6)
P 		15.1
(-2.6)
P 		32.9
(1.3)
P 		40.6
(3)
P 		13.4
(-3)
P 		27
B 47.4
(2.8)
P 		36.9
(0.7)
P 		26.9
(-1.3)
P 		30.9
(-0.5)
P 		48.6
(3)
P 		18.3
(-3)
P 		30
C 35.7
(2.7)
P 		34.8
(2.5)
P 		37.2
(3)
P 		33.8
(2.3)
P 		21.7
(-0.1)
P 		6.8
(-3)
A 		30
avr 34.3
(2.3) 		32.1
(1.8) 		26.4
(0.4) 		32.5
(1.9) 		37
(3) 		12.8
(-3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183651_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12070
Sequence Type Exemplar sequence
Representative Public ID C03G6.8 NCBI
Target Description C03G6.8 /REP_DB=WormBase Gene ID /WP=CE07882 /TR=O01448 /GB=AAB52308.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072472(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072472 NCBI Caenorhabditis elegans C03G6.8 (C03G6.8) mRNA, complete cds. 11/11 None
GENEFINDER00000031573 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7347101:7350728:1 11/11 None
C03G6.8 ENSEMBL cdna:known chromosome:CEL140:V:7349283:7350728:1 gene:C03G6.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031548 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7349283-7350729(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol nhr-147
Ensembl C03G6.8
Entrez Gene 182170 Entrez gene
SwissProt O01448 EMBL-EBI
WormBase CE07882 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
4879 ligand-dependent nuclear receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52308 Hypothetical protein C03G6.8 [Caenorhabditis elegans] ref|NP_504873.1| C03G6.8 [Caenorhabditis elegans] 0.0
blast AAB52308 Hypothetical protein C03G6.8 [Caenorhabditis elegans] ref|NP_504873.1| C03G6.8 [Caenorhabditis elegans] 1.0E-172
blast AAB52310 Hypothetical protein C03G6.10 [Caenorhabditis elegans] ref|NP_504871.1| C03G6.10 [Caenorhabditis elegans] 1.0E-91
blast AAB52312 Hypothetical protein C03G6.12 [Caenorhabditis elegans] ref|NP_504874.1| C03G6.12 [Caenorhabditis elegans] 3.0E-89
blast AAB52309 Serpentine receptor, class h protein 244 [Caenorhabditis elegans] ref|NP_504872.1| Serpentine Receptor, class H family member (srh-244) [Caenorhabditis elegans] 4.0E-80
blast AAB52310 Hypothetical protein C03G6.10 [Caenorhabditis elegans] ref|NP_504871.1| C03G6.10 [Caenorhabditis elegans] 3.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 3.4E-42
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.4E-10
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.9E-10
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 6.5E-80
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 3.4E-42
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.9E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000031573 3 30-49,87-109,141-163
Sequence
Target Sequence 
>C. ELEGANS:183651_AT
atatcatcgattttccaacaggcaatcaatataccaaaacgaataaaaaaatttggaccc
tatgcaatctattgacaattactgaatacatcaagacatttgaatgttttcataaaattt
catctaacgacaggctagttttaactcggcatattatattgatgtgtaagattttacacg
aatcacactatgctgtctccagaaaatttgataattacttgaacccagacggtacccaag
aatcaaaaacagagatgcatcattctttattggctatgtcaatatcaccgttagtacgaa
cacacatacagccagtggaatatgttcttttgaaggcaatgtgtttttgtaatccagccg
tcactggtctctcccagcatgctcaaactacccttgcaaaagaacgccaacaatttggga
acctcttatttgacctttgccgaaaaaatagaagagatggaccaggacattttgtcgaac
tagtaggaattcttgggcttttggaaaatcagcaaagaatgctcaaggatacatatatga
catattatgctccgtttttatctccagaagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATCATCGATTTTCCAACAGGCAA 409 19 542 Antisense
TTGGACCCTATGCAATCTATTGACA 224 709 594 Antisense
GACAGGCTAGTTTTAACTCGGCATA 671 357 670 Antisense
ACACGAATCACACTATGCTGTCTCC 37 111 717 Antisense
GAACCCAGACGGTACCCAAGAATCA 565 345 762 Antisense
GATGCATCATTCTTTATTGGCTATG 241 413 795 Antisense
TGGCTATGTCAATATCACCGTTAGT 610 543 812 Antisense
TTGTAATCCAGCCGTCACTGGTCTC 498 703 888 Antisense
GCATGCTCAAACTACCCTTGCAAAA 274 297 918 Antisense
TTGGGAACCTCTTATTTGACCTTTG 42 699 956 Antisense
TGCTCCGTTTTTATCTCCAGAAGAT 30 581 1089 Antisense
Sequence Source Affymetrix Proprietary Database