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[183649_at]

Description F41D9.3 /REP_DB=WormBase Gene ID /WP=CE28319 /TR=Q94224 /GB=AAB52607.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 04      6grp_total > 15      4grp_total > 61      6grp_cgc > 31      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 342
1 2 3 4 range
A 505
(3)
P 		419.4
(1.3)
P 		445.6
(1.8)
A 		207.9
(-3)
A 		297
B 515.2
(3)
P 		506.9
(2.8)
P 		470.7
(1.9)
P 		270.6
(-3)
A 		245
C 518
(3)
P 		431.2
(1.5)
P 		474.8
(2.2)
P 		176.5
(-3)
A 		342
avr 512.7
(3) 		452.5
(1.8) 		463.7
(2) 		218.3
(-3) 		294

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 396
1 2 3 4 5 6 range
A 541.9
(2.4)
P 		573.6
(3)
P 		269.7
(-2.3)
P 		325.3
(-1.3)
P 		230.9
(-3)
P 		261.7
(-2.5)
A 		343
B 496.8
(3)
P 		396.7
(1)
P 		325.3
(-0.4)
P 		260.6
(-1.7)
P 		309.4
(-0.7)
P 		193.1
(-3)
P 		304
C 589.1
(3)
P 		447
(0.8)
P 		456.6
(1)
P 		338.9
(-0.8)
P 		271.9
(-1.8)
P 		194.6
(-3)
P 		395
avr 542.6
(3) 		472.4
(1.7) 		350.5
(-0.5) 		308.3
(-1.3) 		270.7
(-2) 		216.5
(-3) 		326
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 183.9
(3)
P 		91
(-0.6)
P 		116.5
(0.4)
A 		30.4
(-3)
A 		154
B 164.3
(3)
P 		125.2
(0.8)
P 		109.1
(-0.1)
P 		57.7
(-3)
A 		107
C 171.5
(3)
P 		124
(1)
P 		165.5
(2.7)
P 		29.8
(-3)
A 		142
avr 173.2
(3) 		113.4
(0.3) 		130.4
(1.1) 		39.3
(-3) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 99.9
(-1.3)
P 		204
(3)
P 		58.7
(-3)
P 		82.5
(-2)
P 		69.7
(-2.5)
P 		63.7
(-2.8)
A 		145
B 172.8
(3)
P 		132
(0.6)
P 		79
(-2.4)
P 		69
(-3)
P 		125.7
(0.3)
P 		72
(-2.8)
P 		104
C 218.3
(3)
P 		136.4
(-0.2)
P 		116.2
(-1)
P 		68.1
(-2.9)
P 		88
(-2.1)
P 		65.1
(-3)
P 		153
avr 163.7
(3) 		157.5
(2.6) 		84.6
(-1.9) 		73.2
(-2.6) 		94.5
(-1.3) 		66.9
(-3) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183649_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16850
Sequence Type Exemplar sequence
Representative Public ID F41D9.3 NCBI
Target Description F41D9.3 /REP_DB=WormBase Gene ID /WP=CE28319 /TR=Q94224 /GB=AAB52607.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029477(11), NM_001029480(11), NM_001029476(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029477 NCBI Caenorhabditis elegans Wrapper/Rega-1/Klingon homolog family member (wrk-1) (wrk-1) mRNA, complete cds. 11/11 None
NM_001029480 NCBI Caenorhabditis elegans Wrapper/Rega-1/Klingon homolog family member (wrk-1) (wrk-1) mRNA, complete cds. 11/11 None
NM_001029476 NCBI Caenorhabditis elegans Wrapper/Rega-1/Klingon homolog family member (wrk-1) (wrk-1) mRNA, complete cds. 11/11 None
GENEFINDER00000031101 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8382826:8392518:-1 11/11 None
F41D9.3b.1 ENSEMBL cdna:known chromosome:CEL140:X:8387096:8392518:-1 gene:F41D9.3 11/11 A 
F41D9.3b.2 ENSEMBL cdna:known chromosome:CEL140:X:8387407:8392518:-1 gene:F41D9.3 11/11 A 
F41D9.3e ENSEMBL cdna:known chromosome:CEL140:X:8387901:8392519:-1 gene:F41D9.3 11/11 None
F41D9.3a ENSEMBL cdna:known chromosome:CEL140:X:8387901:8392518:-1 gene:F41D9.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029478 6/11 Cross Hyb Matching Probes None
SNAP00000031095 5/11 Cross Hyb Matching Probes None
F41D9.3c 6/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181093 5 3 NM_001029476 183649_at (11)
NM_001029477 174176_at (11), 183649_at (11)
NM_001029478 174176_at (11)
NM_001029480 183649_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8387177-8392517(-) 100.0 100.0
Public Domain and Genome References
Ensembl F41D9.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM54179 Wrapper/rega-1/klingon homolog protein 1, isoform b [Caenorhabditis elegans] ref|NP_001024648.1| Wrapper/Rega-1/Klingon homolog family member (wrk-1) [Caenorhabditis elegans] 0.0
blast AAL60234 immunoglobulin domain-containing protein WRK-1B [Caenorhabditis elegans] 0.0
blast AAV28344 Wrapper/rega-1/klingon homolog protein 1, isoform e [Caenorhabditis elegans] ref|NP_001024651.1| Wrapper/Rega-1/Klingon homolog family member (wrk-1) [Caenorhabditis elegans] 0.0
blast AAM54178 Wrapper/rega-1/klingon homolog protein 1, isoform a [Caenorhabditis elegans] ref|NP_001024647.1| Wrapper/Rega-1/Klingon homolog family member (wrk-1) [Caenorhabditis elegans] 0.0
blast AAL60233 immunoglobulin domain-containing protein WRK-1A [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.5E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.7E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.6E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.7E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.6E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.6E-7
Pfam IPR005018 EMBL-EBI DOMON domain 6.4E-38
Sequence
Target Sequence 
>C. ELEGANS:183649_AT
ctgactgttggcgacatttccgaagaagctttcggggactacgcgtgccgaatttccaac
aaactcggatccgtcaccgctgtggtgcacgttagtggaagaccaggtccaccacaactt
tcttttgacgaatctgagctcacgtggactgttcgcgcctttgacaagattctcgaatac
cagctttgccaccgattagaaaatgcggatcactttctgccggaggactgcaacagtgtc
agagtgaagaagagcgataataatggtgatgacaaatggacacataccatcgatcttagc
acat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGACTGTTGGCGACATTTCCGAAG 689 237 898 Antisense
GAAGAAGCTTTCGGGGACTACGCGT 223 339 919 Antisense
TACGCGTGCCGAATTTCCAACAAAC 372 649 937 Antisense
TCCAACAAACTCGGATCCGTCACCG 662 585 952 Antisense
CGTCACCGCTGTGGTGCACGTTAGT 308 245 969 Antisense
GTCCACCACAACTTTCTTTTGACGA 624 475 1004 Antisense
GAATCTGAGCTCACGTGGACTGTTC 689 327 1027 Antisense
TGTTCGCGCCTTTGACAAGATTCTC 358 563 1047 Antisense
AAGATTCTCGAATACCAGCTTTGCC 397 155 1063 Antisense
GAAAATGCGGATCACTTTCTGCCGG 627 351 1096 Antisense
ACACATACCATCGATCTTAGCACAT 61 107 1177 Antisense
Sequence Source Affymetrix Proprietary Database