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[183648_s_at]

Description K08F8.5A /REP_DB=WormBase Gene ID /WP=CE03471 /TR=Q21365 /GB=CAA91287.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 63
(2.2)
A 		12.9
(-3)
A 		45.1
(0.3)
A 		71
(3)
A 		58
B 24.8
(-2.3)
A 		20.9
(-3)
A 		55.2
(3)
A 		45.1
(1.2)
A 		34
C 25.7
(-3)
A 		52.9
(-0)
A 		58.2
(0.6)
A 		80.3
(3)
A 		55
avr 37.8
(-1.5) 		28.9
(-3) 		52.8
(0.9) 		65.5
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 158
1 2 3 4 5 6 range
A 8.1
(-2.8)
A 		3.8
(-3)
A 		98.4
(1.2)
A 		92.5
(1)
A 		138
(3)
A 		114.7
(2)
A 		134
B 40.2
(-3)
A 		40.6
(-3)
A 		71.4
(-0.5)
A 		45
(-2.6)
A 		103.9
(2.1)
A 		114.5
(3)
A 		74
C 29.2
(-2.4)
A 		59
(-1.2)
A 		15.7
(-3)
A 		96
(0.3)
A 		64
(-1)
A 		161.7
(3)
A 		146
avr 25.8
(-3) 		34.5
(-2.5) 		61.8
(-0.9) 		77.8
(-0) 		102
(1.4) 		130.3
(3) 		105
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 22.9
(3)
A 		2.8
(-3)
A 		11.8
(-0.3)
A 		10.4
(-0.7)
A 		20
B 7.9
(-0.9)
A 		5.2
(-3)
A 		12.8
(3)
A 		9.6
(0.5)
A 		8
C 8.5
(-3)
A 		15.2
(0.4)
A 		20.3
(3)
A 		13.5
(-0.5)
A 		12
avr 13.1
(1.4) 		7.7
(-3) 		15
(3) 		11.2
(-0.1) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 1.5
(-3)
A 		1.4
(-3)
A 		21.4
(-0)
A 		23.5
(0.3)
A 		41.6
(3)
A 		27.9
(1)
A 		40
B 14
(-2.6)
A 		13.5
(-2.7)
A 		17.3
(-1.9)
A 		11.9
(-3)
A 		42.2
(2.9)
A 		42.7
(3)
A 		31
C 10.8
(-2.2)
A 		18
(-1.3)
A 		4
(-3)
A 		19.3
(-1.2)
A 		20.7
(-1)
A 		54.1
(3)
A 		50
avr 8.8
(-3) 		11
(-2.6) 		14.2
(-2) 		18.2
(-1.3) 		34.8
(1.8) 		41.6
(3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183648_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3100
Sequence Type Exemplar sequence
Representative Public ID K08F8.5A NCBI
Target Description K08F8.5A /REP_DB=WormBase Gene ID /WP=CE03471 /TR=Q21365 /GB=CAA91287.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063463(11), NM_063464(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063463 NCBI Caenorhabditis elegans K08F8.5b (K08F8.5) mRNA, complete cds. 11/11 None
NM_063464 NCBI Caenorhabditis elegans K08F8.5a (K08F8.5) mRNA, complete cds. 11/11 None
SNAP00000029910 ENSEMBL cdna:SNAP chromosome:CEL140:II:8767118:8769225:1 11/11 None
GENEFINDER00000029912 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8767118:8769225:1 11/11 None
K08F8.5b ENSEMBL cdna:known chromosome:CEL140:II:8767338:8769225:1 gene:K08F8.5 11/11 None
K08F8.5a ENSEMBL cdna:known chromosome:CEL140:II:8767503:8769225:1 gene:K08F8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8767499-8769222(+) 99.8 100.0
Public Domain and Genome References
Ensembl K08F8.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91288 Hypothetical protein K08F8.5b [Caenorhabditis elegans] ref|NP_495864.1| K08F8.5b [Caenorhabditis elegans] 0.0
blast CAA91287 Hypothetical protein K08F8.5a [Caenorhabditis elegans] ref|NP_495865.1| K08F8.5a [Caenorhabditis elegans] 0.0
blast CAA91288 Hypothetical protein K08F8.5b [Caenorhabditis elegans] ref|NP_495864.1| K08F8.5b [Caenorhabditis elegans] 1.0E-179
blast CAA91287 Hypothetical protein K08F8.5a [Caenorhabditis elegans] ref|NP_495865.1| K08F8.5a [Caenorhabditis elegans] 1.0E-176
blast CAA91288 Hypothetical protein K08F8.5b [Caenorhabditis elegans] ref|NP_495864.1| K08F8.5b [Caenorhabditis elegans] 1.0E-176
Sequence
Target Sequence 
>C. ELEGANS:183648_S_AT
aattggggaagtgcgtggccatccaataaaaatgtaatgtctataccaaaaaacatccca
tcggcaggcattgatcaatttgttgcgttatggtatcggcatgggaaaccaattatggga
agggcatggcaaagcaatggaagaattgaagcatcttttgtagacgctaaacgagaattc
acgggagcaacagtcggctcactccaacttttgatcagtttgccacctactacagttggt
tatgattatgtatggatgacctacacacaagcaattgactaccgtgacaaagactacgtt
ccagttcatctcagctacatttgtcctgccattgttccagtcgatggaaaattttttcta
ggacaggtgaacatgaagaccgagtgtgctacagtggccctgaacggttcggtgacccaa
ttggatggaggacccgtcaaatcgatcatggttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGGGGAAGTGCGTGGCCATCCA 279 175 544 Antisense
AAAAACATCCCATCGGCAGGCATTG 46 131 592 Antisense
CACGGGAGCAACAGTCGGCTCACTC 539 197 723 Antisense
GGCTCACTCCAACTTTTGATCAGTT 423 539 739 Antisense
TTTGATCAGTTTGCCACCTACTACA 310 667 753 Antisense
CAAAGACTACGTTCCAGTTCATCTC 43 193 831 Antisense
AGTTCATCTCAGCTACATTTGTCCT 60 65 846 Antisense
TACATTTGTCCTGCCATTGTTCCAG 163 645 859 Antisense
GAAGACCGAGTGTGCTACAGTGGCC 294 339 918 Antisense
GAACGGTTCGGTGACCCAATTGGAT 140 145 945 Antisense
GGACCCGTCAAATCGATCATGGTTC 544 523 973 Antisense
Sequence Source Affymetrix Proprietary Database