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[183644_at]

Description R01H2.2 /REP_DB=WormBase Gene ID /WP=CE00727 /TR=Q21628 /GB=AAA50644.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 18      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 60.8
(0.3)
A 		24.8
(-2.6)
A 		19.4
(-3)
A 		95
(3)
A 		76
B 8.9
(-3)
A 		55.9
(0.8)
A 		83.7
(3)
A 		31.3
(-1.2)
A 		75
C 40.4
(-1)
A 		65.2
(2.1)
A 		24.3
(-3)
A 		72.2
(3)
A 		48
avr 36.7
(-3) 		48.6
(-0.6) 		42.5
(-1.8) 		66.2
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 57.8
(-0.8)
A 		51.7
(-1.3)
M 		28.2
(-3)
A 		59.4
(-0.7)
A 		53.7
(-1.1)
A 		109.6
(3)
P 		81
B 29.9
(-3)
A 		55.8
(-0.9)
A 		53.1
(-1.2)
A 		63.2
(-0.4)
A 		79.5
(0.9)
P 		105.7
(3)
P 		76
C 44
(-0.9)
A 		20.3
(-2.7)
A 		64.9
(0.8)
A 		16.6
(-3)
A 		64.8
(0.8)
A 		93.7
(3)
P 		77
avr 43.9
(-2.9) 		42.6
(-3) 		48.7
(-2.4) 		46.4
(-2.6) 		66
(-0.7) 		103
(3) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 22.1
(3)
A 		5.4
(-2.9)
A 		5.1
(-3)
A 		13.9
(0.1)
A 		17
B 2.8
(-3)
A 		13.8
(1)
A 		19.4
(3)
A 		6.7
(-1.6)
A 		17
C 13.4
(-0.1)
A 		18.8
(3)
A 		8.5
(-3)
A 		12.2
(-0.8)
A 		10
avr 12.8
(3) 		12.7
(2.7) 		11
(-2.7) 		10.9
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 10.7
(-1.7)
A 		18.4
(0.6)
M 		6.1
(-3)
A 		15.1
(-0.4)
A 		16.2
(-0.1)
A 		26.7
(3)
P 		21
B 10.4
(-3)
A 		18.6
(-1.3)
A 		12.9
(-2.5)
A 		16.7
(-1.7)
A 		32.3
(1.5)
P 		39.4
(3)
P 		29
C 16.3
(-0.2)
A 		6.2
(-2.4)
A 		16.5
(-0.2)
A 		3.3
(-3)
A 		21
(0.8)
A 		31.4
(3)
P 		28
avr 12.5
(-2.8) 		14.4
(-2.2) 		11.8
(-3) 		11.7
(-3) 		23.2
(0.3) 		32.5
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183644_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6719
Sequence Type Exemplar sequence
Representative Public ID R01H2.2 NCBI
Target Description R01H2.2 /REP_DB=WormBase Gene ID /WP=CE00727 /TR=Q21628 /GB=AAA50644.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066135(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066135 NCBI Caenorhabditis elegans R01H2.2 (R01H2.2) mRNA, complete cds. 11/11 None
SNAP00000040672 ENSEMBL cdna:SNAP chromosome:CEL140:III:7056504:7058422:1 11/11 None
GENEFINDER00000040680 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7056504:7058422:1 11/11 None
R01H2.2 ENSEMBL cdna:known chromosome:CEL140:III:7056504:7058422:1 gene:R01H2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7056501-7058420(+) 95.19 100.0
Public Domain and Genome References
Gene Title
Ensembl R01H2.2
Entrez Gene 187509 Entrez gene
SwissProt Q21628 EMBL-EBI
WormBase CE30097 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498536 R01H2.2 [Caenorhabditis elegans] gb|AAA50644.2| Hypothetical protein R01H2.2 [Caenorhabditis elegans] 0.0
blast CAE67325 Hypothetical protein CBG12787 [Caenorhabditis briggsae] 8.0E-19
blast CAE67123 Hypothetical protein CBG12539 [Caenorhabditis briggsae] 2.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR005514 EMBL-EBI Protein of unknown function DUF316 5.1E-81
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498536.2 1 2-24
R01H2.2 1 2-24
SNAP00000040672 1 2-24
GENEFINDER00000040680 1 2-24
Sequence
Target Sequence 
>C. ELEGANS:183644_AT
atcggataggccccttgcaaaaggtgatcgtggcgggccacttgtaacagatgatggagt
tctaattggatttggatcaacatttgcccttgctgacaacgctgagaatcattatttctt
tgatatcaaatatctcagttccgaaatctgctatttgacaaatatttgtgacatatattc
tccatctacaactacaacacccacaactacgacacctacaactacaacacctacaactac
aacaaaaatcactgcttccacatccaagccaccagcattgaatgagactgtttctacaat
cacattaaaaagtgttgttcgtccaactacaccgattacttatttgaatctcgaggaaca
tgaggaactcgacaaggaaaatgataaggagaatgacaatatagatgttgacaccgactt
gtatctcagtgcagattttttgaacaattcccctcgcgaggcagtaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGGATAGGCCCCTTGCAAAAGGT 423 33 765 Antisense
CAAAAGGTGATCGTGGCGGGCCACT 46 191 782 Antisense
GGCGGGCCACTTGTAACAGATGATG 291 537 796 Antisense
ATTTGGATCAACATTTGCCCTTGCT 457 17 834 Antisense
ATATCTCAGTTCCGAAATCTGCTAT 195 21 894 Antisense
GTGACATATATTCTCCATCTACAAC 656 481 932 Antisense
ACAACAAAAATCACTGCTTCCACAT 161 113 1003 Antisense
ACATCCAAGCCACCAGCATTGAATG 235 105 1024 Antisense
GTTCGTCCAACTACACCGATTACTT 87 439 1081 Antisense
GACACCGACTTGTATCTCAGTGCAG 22 369 1174 Antisense
CAATTCCCCTCGCGAGGCAGTAAGC 211 179 1209 Antisense
Sequence Source Affymetrix Proprietary Database