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[183642_s_at]

Description B0336.7 /REP_DB=WormBase Gene ID /WP=CE00775 /TR=Q10930 /GB=AAK18855.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 78      4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_highest_nonorm > 84      6grp_total > 68      4grp_total > 45      6grp_highest_sub > Da      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 422
1 2 3 4 range
A 747.1
(3)
P 		410.4
(-3)
P 		456
(-2.2)
P 		564.2
(-0.3)
P 		337
B 654.1
(-0.5)
P 		832.2
(3)
P 		563.4
(-2.3)
P 		529.5
(-3)
P 		303
C 732.1
(3)
P 		641.8
(0.5)
P 		581.7
(-1.2)
P 		517.5
(-3)
P 		215
avr 711.1
(3) 		628.1
(0.2) 		533.7
(-3) 		537.1
(-2.9) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 245
1 2 3 4 5 6 range
A 540.1
(-2.1)
P 		522.4
(-2.6)
P 		523.2
(-2.6)
P 		509.8
(-3)
P 		622.9
(0.5)
P 		706.4
(3)
P 		197
B 651.3
(0.3)
P 		555.2
(-2.4)
P 		601.7
(-1.1)
P 		535.2
(-3)
P 		688.1
(1.3)
P 		747.5
(3)
P 		212
C 571
(-1.3)
P 		561.6
(-1.5)
P 		610.3
(-0.3)
P 		649
(0.6)
P 		502.1
(-3)
P 		743.7
(3)
P 		242
avr 587.5
(-1.7) 		546.4
(-3) 		578.4
(-2) 		564.7
(-2.4) 		604.4
(-1.1) 		732.5
(3) 		186
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 189
1 2 3 4 range
A 272
(3)
P 		89.1
(-2.8)
P 		119.2
(-1.8)
P 		82.6
(-3)
P 		189
B 208.6
(3)
P 		205.5
(2.8)
P 		130.5
(-1.9)
P 		112.8
(-3)
P 		96
C 242.3
(3)
P 		184.5
(0.8)
P 		202.7
(1.5)
P 		87.3
(-3)
P 		155
avr 241
(3) 		159.7
(-0.3) 		150.8
(-0.7) 		94.2
(-3) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 99.6
(-3)
P 		185.8
(2.9)
P 		113.9
(-2)
P 		129.3
(-1)
P 		188
(3)
P 		172
(1.9)
P 		88
B 226.6
(0.7)
P 		184.8
(-1.1)
P 		146.1
(-2.8)
P 		141.7
(-3)
P 		279.6
(3)
P 		278.7
(3)
P 		138
C 211.7
(1.1)
P 		171.4
(-0.9)
P 		155.3
(-1.7)
P 		130.5
(-3)
P 		162.5
(-1.4)
P 		249
(3)
P 		119
avr 179.3
(-0.3) 		180.7
(-0.2) 		138.4
(-2.7) 		133.8
(-3) 		210
(1.6) 		233.2
(3) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183642_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6024
Sequence Type Exemplar sequence
Representative Public ID B0336.7 NCBI
Target Description B0336.7 /REP_DB=WormBase Gene ID /WP=CE00775 /TR=Q10930 /GB=AAK18855.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_181895(11), NM_065826(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_181895 NCBI Caenorhabditis elegans B0336.7b (B0336.7) mRNA, complete cds. 11/11 None
NM_065826 NCBI Caenorhabditis elegans B0336.7a (B0336.7) mRNA, complete cds. 11/11 None
SNAP00000008873 ENSEMBL cdna:SNAP chromosome:CEL140:III:5694732:5697296:-1 11/11 None
GENEFINDER00000008892 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5694732:5697190:-1 11/11 None
B0336.7b.2 ENSEMBL cdna:known chromosome:CEL140:III:5694684:5697241:-1 gene:B0336.7 11/11 None
B0336.7b.1 ENSEMBL cdna:known chromosome:CEL140:III:5694684:5697314:-1 gene:B0336.7 11/11 None
B0336.7a ENSEMBL cdna:known chromosome:CEL140:III:5694732:5697296:-1 gene:B0336.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5694730-5697189(-) 100.0 100.0
Public Domain and Genome References
Ensembl B0336.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18855 Hypothetical protein B0336.7a [Caenorhabditis elegans] ref|NP_498227.1| B0336.7a [Caenorhabditis elegans] 0.0
blast AAV58892 Hypothetical protein B0336.7b [Caenorhabditis elegans] ref|NP_871624.2| B0336.7b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006612 EMBL-EBI Zinc-finger protein of unknown function DM3 2.3E-19
Pfam IPR006612 EMBL-EBI Zinc-finger protein of unknown function DM3 2.3E-19
Pfam IPR006612 EMBL-EBI Zinc-finger protein of unknown function DM3 2.3E-19
Sequence
Target Sequence 
>C. ELEGANS:183642_S_AT
gacgtcattcggacaattcatctcgatggatataaatttttgagcaatggagatccattt
aatggacatcattttgcatgtagacctcataatgtctacgattacaaatcatcttggcgt
ccagttcccggtcaaaatggagaagccaattttctcgatgaggttgtctacgttgatgag
ggtggaaattccctggaatggcatgccgtgacccgtcccggagacaatcgagaagttgaa
gcggtgcatgagaaagaggatccgccgattatgatgtatgatggtaatttcgaagatccc
atcaccgaggaagtgatcgaaacgaattatgtcttggatgaaccacctgtactatattcc
caagatccggatcgcaagcctaagccatcgaaaaagtccagaataaagtgccatctatgc
ttgaagaccagcttttcgtcaacacaaagtctggttgatcatcttcaaaagcacattctc
gatgagaaagaatgcaagcgttgccagaagcggatctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGTCATTCGGACAATTCATCTCG 688 377 883 Antisense
GCGTCCAGTTCCCGGTCAAAATGGA 684 287 999 Antisense
TTCTCGATGAGGTTGTCTACGTTGA 456 691 1034 Antisense
AATTCCCTGGAATGGCATGCCGTGA 344 173 1069 Antisense
ACCCGTCCCGGAGACAATCGAGAAG 95 89 1093 Antisense
ATTTCGAAGATCCCATCACCGAGGA 184 17 1169 Antisense
TGAACCACCTGTACTATATTCCCAA 681 573 1221 Antisense
CGGATCGCAAGCCTAAGCCATCGAA 655 243 1250 Antisense
AAGTGCCATCTATGCTTGAAGACCA 271 159 1288 Antisense
GAAGACCAGCTTTTCGTCAACACAA 563 339 1305 Antisense
GCAAGCGTTGCCAGAAGCGGATCTC 243 321 1376 Antisense
Sequence Source Affymetrix Proprietary Database