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[183641_at]

Description F08B12.4 /REP_DB=WormBase Gene ID /WP=CE26708 /TR=Q19191 /GB=CAA92114.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 71      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 29      6grp_total > 71      4grp_total > 60      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5655
1 2 3 4 range
A 7232.8
(1)
P 		8993.1
(3)
P 		8483.7
(2.4)
P 		3816
(-3)
P 		5177
B 7745.6
(3)
P 		7198.5
(2.2)
P 		7583.3
(2.8)
P 		3656.8
(-3)
P 		4089
C 7339.7
(3)
P 		6866.5
(2.3)
P 		7178.7
(2.8)
P 		3338.5
(-3)
P 		4001
avr 7439.4
(2.6) 		7686
(2.9) 		7748.6
(3) 		3603.8
(-3) 		4145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7547
1 2 3 4 5 6 range
A 12070.3
(-1.6)
P 		11950.5
(-1.7)
P 		13378.9
(-0.3)
P 		16863.6
(3)
P 		13577.5
(-0.1)
P 		10586
(-3)
P 		6278
B 10567.2
(-1.2)
P 		10741.6
(-0.9)
P 		12856.7
(2.1)
P 		13482.5
(3)
P 		13456.5
(3)
P 		9317.1
(-3)
P 		4165
C 11562.7
(-1.3)
P 		10230.5
(-2.4)
P 		16694.8
(3)
P 		15621.8
(2.1)
P 		15639.5
(2.1)
P 		9493
(-3)
P 		7202
avr 11400.1
(-1.3) 		10974.2
(-1.7) 		14310.1
(1.9) 		15322.6
(3) 		14224.5
(1.8) 		9798.7
(-3) 		5524
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2075
1 2 3 4 range
A 2633.5
(3)
P 		1952.2
(1)
P 		2217.8
(1.8)
P 		558.6
(-3)
P 		2075
B 2470
(3)
P 		1777.9
(0.5)
P 		1757.2
(0.5)
P 		779.3
(-3)
P 		1691
C 2429.7
(2.8)
P 		1974.2
(1.4)
P 		2502
(3)
P 		562.9
(-3)
P 		1939
avr 2511.1
(3) 		1901.4
(1.1) 		2159
(1.9) 		633.6
(-3) 		1878

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3242
1 2 3 4 5 6 range
A 2225.1
(-3)
P 		4250.2
(2.9)
P 		2913.6
(-1)
P 		4277
(3)
P 		4097.1
(2.5)
P 		2577.4
(-2)
P 		2052
B 3676.8
(-1.6)
P 		3575.4
(-1.8)
P 		3122
(-3)
P 		3571
(-1.9)
P 		5467.2
(3)
P 		3474.3
(-2.1)
P 		2345
C 4285.8
(0.6)
P 		3121.6
(-3)
P 		4249.1
(0.5)
P 		3141.5
(-2.9)
P 		5060.7
(3)
P 		3177.8
(-2.8)
P 		1939
avr 3395.9
(-1.9) 		3649.1
(-1.1) 		3428.2
(-1.8) 		3663.2
(-1) 		4875
(3) 		3076.5
(-3) 		1799
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183641_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16117
Sequence Type Exemplar sequence
Representative Public ID F08B12.4 NCBI
Target Description F08B12.4 /REP_DB=WormBase Gene ID /WP=CE26708 /TR=Q19191 /GB=CAA92114.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077510(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077510 NCBI Caenorhabditis elegans F08B12.4 (F08B12.4) mRNA, complete cds. 11/11 None
SNAP00000001948 ENSEMBL cdna:SNAP chromosome:CEL140:X:11407082:11407626:-1 11/11 None
F08B12.4.1 ENSEMBL cdna:known chromosome:CEL140:X:11406980:11407656:-1 gene:F08B12.4 11/11 None
F08B12.4.2 ENSEMBL cdna:known chromosome:CEL140:X:11406980:11407592:-1 gene:F08B12.4 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000001955 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11407081-11407626(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F08B12.4
Entrez Gene 181333 Entrez gene
SwissProt Q19191 EMBL-EBI
WormBase CE26708 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T20576 hypothetical protein F08B12.4 - Caenorhabditis elegans 2.0E-62
blast CAA92114 Hypothetical protein F08B12.4 [Caenorhabditis elegans] ref|NP_509911.1| F08B12.4 [Caenorhabditis elegans] gb|AAG50221.1| XM26 [Caenorhabditis elegans] sp|Q19191|YZ10_CAEEL Hypothetical protein F08B12.4 in chromosome X 3.0E-54
blast T20576 hypothetical protein F08B12.4 - Caenorhabditis elegans 3.0E-54
blast CAE70643 Hypothetical protein CBG17344 [Caenorhabditis briggsae] 5.0E-51
blast CAE70643 Hypothetical protein CBG17344 [Caenorhabditis briggsae] 6.0E-45
Sequence
Target Sequence 
>C. ELEGANS:183641_AT
attcatttgtcattcttgctattgttttagccatcgttaacgccatgccagttgaacaag
acggacttaccggaggacgcggagtcccacatccaaactctgctgctggacaagctcttt
ccggaaagaccggaggatcttccgttccacatccaaattctgctgctggacaagcccttt
ccggaggaatgaccggaggatctgctgttccacatccaaactctgccgctggacaggaac
ttaccaacaaaaatcttgaggagaaaagcgtcttggaagggggaacccaggtcaagccat
ggctcaagaaccaaccagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCATTTGTCATTCTTGCTATTGT 685 11 17 Antisense
TTTAGCCATCGTTAACGCCATGCCA 80 669 42 Antisense
ACGCCATGCCAGTTGAACAAGACGG 46 91 56 Antisense
AACTCTGCTGCTGGACAAGCTCTTT 283 141 112 Antisense
TTCCACATCCAAATTCTGCTGCTGG 564 701 161 Antisense
AAATTCTGCTGCTGGACAAGCCCTT 98 115 171 Antisense
GACAAGCCCTTTCCGGAGGAATGAC 572 359 185 Antisense
AATGACCGGAGGATCTGCTGTTCCA 474 165 204 Antisense
AAACTCTGCCGCTGGACAGGAACTT 525 127 234 Antisense
GAAGGGGGAACCCAGGTCAAGCCAT 540 331 292 Antisense
GCCATGGCTCAAGAACCAACCAGAC 659 279 312 Antisense
Sequence Source Affymetrix Proprietary Database