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[183640_at] 7TM chemoreceptor, srz family

Description F58E2.9 /REP_DB=WormBase Gene ID /WP=CE19474 /TR=Q9TZ00 /GB=AAC68969.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 09      6grp_cgc > 52      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 13.8
(-2.4)
A 		9.2
(-2.7)
A 		5.5
(-3)
A 		86.9
(3)
P 		81
B 13.1
(-3)
A 		14.2
(-2.5)
A 		21.2
(0.7)
A 		26.4
(3)
A 		13
C 1.4
(-3)
A 		32.2
(2.2)
A 		16.8
(-0.4)
A 		36.9
(3)
A 		36
avr 9.4
(-3) 		18.5
(-1.7) 		14.5
(-2.2) 		50.1
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 10.8
(-1.6)
A 		36.7
(3)
A 		14.6
(-0.9)
A 		6.2
(-2.4)
A 		21.5
(0.3)
A 		2.9
(-3)
A 		34
B 35.4
(3)
P 		9.9
(-2.6)
A 		7.9
(-3)
A 		15.3
(-1.4)
A 		19.7
(-0.4)
A 		8.5
(-2.9)
A 		28
C 2.1
(-3)
A 		26
(3)
A 		18.8
(1.2)
A 		22.8
(2.2)
A 		11.9
(-0.5)
A 		2.8
(-2.8)
A 		24
avr 16.1
(0.5) 		24.2
(3) 		13.8
(-0.2) 		14.8
(0.1) 		17.7
(1) 		4.7
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 5
(-1.1)
A 		2
(-2.7)
A 		1.4
(-3)
A 		12.7
(3)
P 		11
B 4.2
(-1)
A 		3.5
(-3)
A 		4.9
(1)
A 		5.6
(3)
A 		2
C 0.5
(-3)
A 		9.3
(3)
A 		5.9
(0.7)
A 		6.2
(0.9)
A 		9
avr 3.2
(-3) 		4.9
(-1) 		4.1
(-1.9) 		8.2
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2
(-2.4)
A 		13.1
(3)
A 		3.2
(-1.8)
A 		1.6
(-2.6)
A 		6.5
(-0.2)
A 		0.7
(-3)
A 		12
B 12.3
(3)
P 		3.3
(-2.2)
A 		1.9
(-3)
A 		4.1
(-1.7)
A 		8
(0.5)
A 		3.2
(-2.3)
A 		10
C 0.8
(-3)
A 		7.9
(3)
A 		4.8
(0.4)
A 		4.6
(0.2)
A 		3.9
(-0.4)
A 		1
(-2.8)
A 		7
avr 5
(0.1) 		8.1
(3) 		3.3
(-1.4) 		3.4
(-1.3) 		6.1
(1.2) 		1.6
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183640_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10459
Sequence Type Exemplar sequence
Representative Public ID F58E2.9 NCBI
Target Description F58E2.9 /REP_DB=WormBase Gene ID /WP=CE19474 /TR=Q9TZ00 /GB=AAC68969.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067949(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067949 NCBI Caenorhabditis elegans Serpentine Receptor, class Z family member (srz-23) (srz-23) mRNA, complete cds. 11/11 None
F58E2.9 ENSEMBL cdna:known chromosome:CEL140:IV:3453605:3454785:1 gene:F58E2.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3453610-3454791(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srz family
Gene Symbol srz-23
Ensembl F58E2.9
Entrez Gene 186523 Entrez gene
SwissProt Q9TZ00 EMBL-EBI
WormBase CE37245 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68969 Serpentine receptor, class z protein 23 [Caenorhabditis elegans] ref|NP_500350.2| Serpentine Receptor, class Z family member (srz-23) [Caenorhabditis elegans] 1.0E-175
blast CAB07202 Hypothetical protein F31E9.5 [Caenorhabditis elegans] ref|NP_507383.1| Serpentine Receptor, class Z family member (srz-58) [Caenorhabditis elegans] 5.0E-44
blast AAC68997 Hypothetical protein W05E7.2 [Caenorhabditis elegans] ref|NP_500345.2| Serpentine Receptor, class Z family member (srz-32) [Caenorhabditis elegans] 6.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 1.3E-10
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 1.1E-31
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500350.2 7 15-37,66-88,110-132,163-180,195-217,238-257,267-289
F58E2.9 7 15-37,66-88,110-132,163-180,195-217,238-257,267-289
Sequence
Target Sequence 
>C. ELEGANS:183640_AT
ttactatttatttctttccgtcgagtgagaaaatagtgttaaaatttcaaacatacgtca
cgaaacacataaaatttgcgtattgtctcttgatcgtgaaagatatacttgctctgatat
atgcgctctggaagcatgtaaatttgaaaggcggcattgatgtgtactttatatattttg
cattttattacaccatcttttttttgccagttctcgccagttttctatacattccaataa
tgataagtatacaaaagcgtgctcacttgccctcttttcaagaaaatgaaccacaaaagt
ttattttttggcaaacgattgctgcaactgttgtaaaaattattcctttatatttgctta
taactttggatgaggtagaactgaagttttttataattgtctgtattatattcgacttgt
ttataacacctctattgattcaagtgtcttatttgggatgtaacaagagaaacgtgaacg
ctttgatttcatcattcaaatttaaaaagtttgtgcaagttttatgcggttctgatagtg
agagtcctactgtacatccaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTACTATTTATTTCTTTCCGTCGAG 425 681 458 Antisense
TTTGCGTATTGTCTCTTGATCGTGA 319 667 532 Antisense
CTTGCTCTGATATATGCGCTCTGGA 214 219 565 Antisense
AAGGCGGCATTGATGTGTACTTTAT 542 161 605 Antisense
TTTTGCATTTTATTACACCATCTTT 464 677 633 Antisense
TACACCATCTTTTTTTTGCCAGTTC 66 643 646 Antisense
GTTCTCGCCAGTTTTCTATACATTC 566 443 667 Antisense
CTCACTTGCCCTCTTTTCAAGAAAA 488 227 719 Antisense
GGCAAACGATTGCTGCAACTGTTGT 390 533 767 Antisense
GTGAACGCTTTGATTTCATCATTCA 137 481 931 Antisense
GTGAGAGTCCTACTGTACATCCACA 186 483 995 Antisense
Sequence Source Affymetrix Proprietary Database