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[183639_at]

Description F13A7.11 /REP_DB=WormBase Gene ID /WP=CE15816 /TR=O45351 /GB=CAB07571.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 02      4grp_high_8_8 > 08      6grp_total > 07      4grp_total > 31      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 238.8
(3)
P 		142.7
(-3)
P 		152.8
(-2.4)
A 		152.2
(-2.4)
P 		96
B 207.4
(3)
P 		149.9
(-0.5)
A 		109.1
(-3)
A 		164.7
(0.4)
P 		98
C 249.7
(3)
P 		131.4
(-3)
A 		168.3
(-1.1)
P 		228
(1.9)
P 		118
avr 232
(3) 		141.3
(-3) 		143.4
(-2.9) 		181.6
(-0.3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 295
1 2 3 4 5 6 range
A 305.9
(3)
P 		249.9
(1.2)
P 		201.3
(-0.4)
M 		170.1
(-1.5)
P 		123.8
(-3)
A 		230
(0.5)
P 		182
B 389.5
(3)
P 		240.6
(-0.3)
P 		230.1
(-0.5)
P 		164.5
(-2)
A 		119.9
(-3)
P 		166.5
(-2)
P 		270
C 322
(3)
P 		271.8
(1.7)
P 		244.6
(1)
P 		197
(-0.3)
P 		94.8
(-3)
A 		186.1
(-0.6)
P 		227
avr 339.1
(3) 		254.1
(0.7) 		225.3
(-0) 		177.2
(-1.3) 		112.8
(-3) 		194.2
(-0.8) 		226
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 87
(3)
P 		31
(-2.2)
P 		40
(-1.4)
A 		22.3
(-3)
P 		65
B 66.1
(3)
P 		37
(-1.3)
A 		25.3
(-3)
A 		35.1
(-1.6)
P 		41
C 82.7
(3)
P 		37.8
(-3)
A 		58.7
(-0.2)
P 		38.4
(-2.9)
P 		45
avr 78.6
(3) 		35.3
(-2.6) 		41.3
(-1.8) 		31.9
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 56.4
(-0.8)
P 		88.9
(3)
P 		43.8
(-2.2)
M 		43.1
(-2.3)
P 		37.3
(-3)
A 		56
(-0.8)
P 		52
B 135.5
(3)
P 		80.1
(-0.6)
P 		55.9
(-2.2)
P 		43.6
(-3)
A 		48.7
(-2.7)
P 		62.1
(-1.8)
P 		92
C 119.4
(3)
P 		82.9
(0.5)
P 		62.3
(-0.9)
P 		39.6
(-2.4)
P 		30.7
(-3)
A 		62.3
(-0.9)
P 		89
avr 103.8
(3) 		84
(1.2) 		54
(-1.6) 		42.1
(-2.7) 		38.9
(-3) 		60.1
(-1) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183639_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14674
Sequence Type Exemplar sequence
Representative Public ID F13A7.11 NCBI
Target Description F13A7.11 /REP_DB=WormBase Gene ID /WP=CE15816 /TR=O45351 /GB=CAB07571.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074743(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074743 NCBI Caenorhabditis elegans F13A7.11 (F13A7.11) mRNA, complete cds. 11/11 None
GENEFINDER00000025242 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16395065:16397649:-1 11/11 None
F13A7.11 ENSEMBL cdna:known chromosome:CEL140:V:16396661:16397649:-1 gene:F13A7.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025229 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16396660-16397649(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13A7.11
Entrez Gene 184406 Entrez gene
SwissProt O45351 EMBL-EBI
WormBase CE15816 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07574 Hypothetical protein F13A7.2 [Caenorhabditis elegans] ref|NP_507143.2| Serpentine Receptor, class D (delta) family member (srd-63) [Caenorhabditis elegans] sp|O17800|SRD63_CAEEL Serpentine receptor class delta-63 (Protein srd-63) 0.0
blast CAB07571 Hypothetical protein F13A7.11 [Caenorhabditis elegans] ref|NP_507144.1| F13A7.11 [Caenorhabditis elegans] 1.0E-125
blast CAB07571 Hypothetical protein F13A7.11 [Caenorhabditis elegans] ref|NP_507144.1| F13A7.11 [Caenorhabditis elegans] 1.0E-124
blast AAB94968 Serpentine receptor, class d (delta) protein 69 [Caenorhabditis elegans] ref|NP_497542.1| Serpentine Receptor, class D (delta) family member (srd-69) [Caenorhabditis elegans] 1.0E-110
blast CAB01116 Hypothetical protein C06B3.6 [Caenorhabditis elegans] ref|NP_506450.1| C06B3.6 [Caenorhabditis elegans] 2.0E-76
blast CAE66199 Hypothetical protein CBG11439 [Caenorhabditis briggsae] 9.0E-66
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000025242 7 239-261,273-292,312-334,355-377,419-437,467-489,499-521
Sequence
Target Sequence 
>C. ELEGANS:183639_AT
aaaggctcccacatatgcagccatagtaaaaatcgagcattttgaaaatgatgatgcttc
atccaaggattttgaaccattcgtagtatactcacttaacaagaagaaacgatgggagat
taatgaggaatctctgaactcctctactgaaggtacttccactaaatctgtgattatcga
tagagaaatcccagatttacaagattcttggtggtgtcttcaaaacgaccttctcaataa
ctgcatttaccactcaaacccagtcaactctgcccagatggcaactgccaaaaaatacga
aaaagtgattggctaccacattgtccgaattccagtaaaccacaaaaaggtgtttgacaa
aaaatgcactagagaccttagctatcgatatcgtgattctattgggaatgttcccagaga
tttgactgtgttacagtatgaaatgaaagaagttgaacatggaaaggaagactttgcaaa
ggaaaatatttctccggaagtcaataatccatcgaaaactatcgggttctacaatctcga
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGGCTCCCACATATGCAGCCATA 228 121 69 Antisense
GAACCATTCGTAGTATACTCACTTA 708 345 142 Antisense
AGGAATCTCTGAACTCCTCTACTGA 339 55 194 Antisense
GAACTCCTCTACTGAAGGTACTTCC 605 347 204 Antisense
GGTGGTGTCTTCAAAACGACCTTCT 201 499 278 Antisense
AACGACCTTCTCAATAACTGCATTT 107 145 292 Antisense
AACTGCATTTACCACTCAAACCCAG 213 143 307 Antisense
AACTCTGCCCAGATGGCAACTGCCA 314 141 334 Antisense
ACCACATTGTCCGAATTCCAGTAAA 607 83 383 Antisense
GAGACCTTAGCTATCGATATCGTGA 95 395 440 Antisense
AACTATCGGGTTCTACAATCTCGAA 400 137 585 Antisense
Sequence Source Affymetrix Proprietary Database