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[183638_at]

Description C55A1.10 /REP_DB=WormBase Gene ID /WP=CE08996 /TR=O17713 /GB=CAB04007.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 31      6grp_cgc > 86      6grp_cgc_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 27.9
(2.1)
A 		3.1
(-3)
A 		22.3
(0.9)
A 		32.4
(3)
A 		29
B 20.1
(2)
A 		23.4
(3)
A 		5.6
(-2.1)
A 		2.6
(-3)
A 		21
C 59.8
(3)
A 		9.7
(-3)
A 		10.8
(-2.9)
A 		43.8
(1.1)
A 		50
avr 35.9
(3) 		12.1
(-3) 		12.9
(-2.8) 		26.3
(0.6) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 6.9
(-1.8)
A 		3.8
(-2.6)
A 		8.5
(-1.4)
A 		24.6
(3)
A 		18.9
(1.5)
A 		2.5
(-3)
A 		22
B 26
(0.2)
A 		17.6
(-1)
A 		3
(-3)
A 		46.5
(3)
A 		3.8
(-2.9)
A 		31.6
(0.9)
A 		44
C 2.6
(-3)
A 		8
(-1.7)
A 		18.5
(0.8)
A 		5.6
(-2.3)
A 		27.7
(3)
A 		16.5
(0.3)
A 		25
avr 11.8
(-2.2) 		9.8
(-3) 		10
(-2.9) 		25.6
(3) 		16.8
(-0.3) 		16.9
(-0.3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 10.2
(3)
A 		0.7
(-3)
A 		5.8
(0.2)
A 		4.7
(-0.5)
A 		10
B 6.4
(3)
A 		5.8
(2.4)
A 		1.3
(-2.3)
A 		0.6
(-3)
A 		6
C 19.8
(3)
A 		2.8
(-3)
A 		3.8
(-2.6)
A 		7.4
(-1.4)
A 		17
avr 12.1
(3) 		3.1
(-3) 		3.6
(-2.7) 		4.2
(-2.3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.3
(-2.3)
A 		1.3
(-2.3)
A 		1.8
(-1.7)
A 		6.2
(3)
A 		5.7
(2.5)
A 		0.6
(-3)
A 		6
B 9.1
(1.3)
A 		5.8
(-0.4)
A 		0.7
(-3)
A 		12.3
(3)
A 		1.5
(-2.6)
A 		11.8
(2.7)
A 		12
C 1
(-3)
A 		2.4
(-1.9)
A 		4.7
(-0.2)
A 		1.1
(-2.9)
A 		8.9
(3)
A 		5.5
(0.4)
A 		8
avr 3.8
(-1) 		3.2
(-1.8) 		2.4
(-3) 		6.5
(3) 		5.4
(1.4) 		6
(2.3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183638_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14037
Sequence Type Exemplar sequence
Representative Public ID C55A1.10 NCBI
Target Description C55A1.10 /REP_DB=WormBase Gene ID /WP=CE08996 /TR=O17713 /GB=CAB04007.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C55A1.10 ENSEMBL cdna:pseudogene chromosome:CEL140:V:15642262:15645083:1 gene:C55A1.10 None
SNAP00000022795 ENSEMBL cdna:SNAP chromosome:CEL140:V:15642262:15642733:1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000022807 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15642261-15645083(+) 100.0 100.0
Public Domain and Genome References
Ensembl C55A1.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T20248 hypothetical protein C55A1.10 - Caenorhabditis elegans 5.0E-46
blast CAE64895 Hypothetical protein CBG09709 [Caenorhabditis briggsae] 4.0E-27
blast CAA98445 Hypothetical protein D1054.12 [Caenorhabditis elegans] ref|NP_505760.2| Serpentine Receptor, class H family member (srh-184) [Caenorhabditis elegans] 4.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 9.4E-61
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000022795 3 15-37,50-69,73-92
Sequence
Target Sequence 
>C. ELEGANS:183638_AT
ttagttctatggcagctccggtgatccttcttcctgtctgtgcaggctatccactaggag
tttcttgggcacttggaattcctactgatgttcagacatattggcttgacgaacgttatc
accacctggtcaatataaacttgtccaatgaaatacgtagcttgaagcgaaatatctatg
tatttgttcattacactattgcagtgacatacattataccagtttttagtcttccgtgtc
tttctaacgatatcctaaagcgtcctggattcctagtcctttcagttggtaacctcgaga
tatcattttgcgttggtggtatgatcattctaattccagtcacgtgctaccgctcgccta
tgtgcgctcaaatattcatcccatttgttgtgattgtgattccaaccgtatattgcacgt
attctgtgatttttgaatatcataatcaggattcaggcgcaacaaacattgctatggctt
gctttgcacttcacggaattttatcaacagtgacgttggttgtagtgcataccccgtatc
gtgaagcaactca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAGTTCTATGGCAGCTCCGGTGAT 244 679 209 Antisense
TCTTCCTGTCTGTGCAGGCTATCCA 596 617 237 Antisense
GGCTTGACGAACGTTATCACCACCT 468 537 311 Antisense
TAGTCTTCCGTGTCTTTCTAACGAT 64 651 435 Antisense
TAAAGCGTCCTGGATTCCTAGTCCT 298 639 464 Antisense
TAGTCCTTTCAGTTGGTAACCTCGA 505 529 482 Antisense
GATCATTCTAATTCCAGTCACGTGC 646 419 531 Antisense
ATGTGCGCTCAAATATTCATCCCAT 623 49 568 Antisense
CATTGCTATGGCTTGCTTTGCACTT 120 217 675 Antisense
ACGTTGGTTGTAGTGCATACCCCGT 657 93 721 Antisense
ATACCCCGTATCGTGAAGCAACTCA 465 21 737 Antisense
Sequence Source Affymetrix Proprietary Database