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[183637_at]

Description C49H3.6 /REP_DB=WormBase Gene ID /WP=CE04232 /TR=Q9GYR1 /GB=AAF99895.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      4grp_highest_8_8 > 62      4grp_high_8_8 > 18      6grp_highest_nonorm > 73      6grp_total > 93      4grp_total > 29      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 260
1 2 3 4 range
A 552.3
(3)
P 		471.9
(-0)
P 		393.8
(-3)
P 		512.8
(1.5)
P 		159
B 628.3
(3)
P 		501.3
(-0.4)
P 		404.4
(-3)
P 		615.7
(2.7)
P 		224
C 597
(3)
P 		488.1
(0.1)
P 		368.5
(-3)
P 		539.6
(1.5)
P 		229
avr 592.5
(3) 		487.1
(-0.1) 		388.9
(-3) 		556
(1.9) 		204

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 571.1
(-0.3)
P 		589.6
(0.4)
P 		490.5
(-3)
P 		537.7
(-1.4)
P 		667.9
(3)
P 		576.9
(-0.1)
P 		177
B 484
(-3)
P 		577.6
(2.7)
P 		502.7
(-1.9)
P 		545
(0.7)
P 		581.9
(3)
P 		505.6
(-1.7)
P 		98
C 499.9
(-3)
P 		530.7
(0.4)
P 		508.7
(-2)
P 		553.8
(3)
P 		532.2
(0.6)
P 		514.1
(-1.4)
P 		54
avr 518.3
(-1.9) 		566
(1.2) 		500.6
(-3) 		545.5
(-0.1) 		594
(3) 		532.2
(-1) 		93
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 201.1
(3)
P 		102.4
(-1.7)
P 		103
(-1.7)
P 		75.1
(-3)
P 		126
B 200.4
(3)
P 		123.8
(-1.3)
P 		93.7
(-3)
P 		131.2
(-0.9)
P 		107
C 197.6
(3)
P 		140.3
(-0.2)
P 		128.4
(-0.9)
P 		91
(-3)
P 		107
avr 199.7
(3) 		122.2
(-1.6) 		108.4
(-2.4) 		99.1
(-3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 105.3
(-3)
P 		209.7
(3)
P 		106.8
(-2.9)
P 		136.4
(-1.2)
P 		201.6
(2.5)
P 		140.4
(-1)
P 		104
B 168.4
(-0.6)
P 		192.2
(0.7)
P 		122.1
(-3)
P 		144.3
(-1.8)
P 		236.4
(3)
P 		188.5
(0.5)
P 		114
C 185.3
(3)
P 		161.9
(1.1)
P 		129.5
(-1.5)
P 		111.4
(-3)
P 		172.2
(1.9)
P 		172.1
(1.9)
P 		74
avr 153
(-0.6) 		187.9
(1.9) 		119.5
(-3) 		130.7
(-2.2) 		203.4
(3) 		167
(0.4) 		84
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183637_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9550
Sequence Type Exemplar sequence
Representative Public ID C49H3.6 NCBI
Target Description C49H3.6 /REP_DB=WormBase Gene ID /WP=CE04232 /TR=Q9GYR1 /GB=AAF99895.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068915(11), NM_068914(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068915 NCBI Caenorhabditis elegans C49H3.6a (C49H3.6) mRNA, complete cds. 11/11 None
NM_068914 NCBI Caenorhabditis elegans C49H3.6b (C49H3.6) mRNA, complete cds. 9/11 None
SNAP00000028665 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7903760:7906193:1 11/11 None
GENEFINDER00000028681 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7903760:7906860:1 11/11 None
C49H3.6b ENSEMBL cdna:known chromosome:CEL140:IV:7903723:7907060:1 gene:C49H3.6 9/11 None
C49H3.6a ENSEMBL cdna:known chromosome:CEL140:IV:7903760:7907066:1 gene:C49H3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7903765-7906199(+) 100.0 100.0
Public Domain and Genome References
Ensembl C49H3.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL02470 Hypothetical protein C49H3.6a [Caenorhabditis elegans] ref|NP_501316.2| C49H3.6a [Caenorhabditis elegans] 0.0
blast T34178 hypothetical protein C49H3.6 - Caenorhabditis elegans 0.0
blast AAL02471 Hypothetical protein C49H3.6b [Caenorhabditis elegans] ref|NP_501315.1| C49H3.6b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:183637_AT
ggaatgtactacctcaacttccacccgacacaggatccctaataatggcgaatcgaggtg
caaaaccagcagttaatagacaacagccagctcctcctcctgtagctcgtcttccaaatt
cagcaacatttccaactgaaaagagtcgacttccaagagctccacctccagctgtaacaa
caccggtccctcgaatgagtattggaagtttgccggcatctagttctaatgtacctcgca
caatgagttcgccagtgaaaaagacaccagttatgggtgtttcctccacagcagtccgac
gccctcagtccgcagcaactactacaatgccaactacctcagttataacaaatacatctg
ctgtgatgccactgtcgcctgatctcgaacagctggaggctgccatacaatctatgaatg
ttgttaccgccagtccccccgcatattcaactgccatggccaaacggagttcaagtcttc
cgagagaagcaaataacaatccaccaggagctccaatccgtagaagcacgatgaacggtg
gaatgcacacatctacgacgggagtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATGTACTACCTCAACTTCCACC 457 515 995 Antisense
GTAGCTCGTCTTCCAAATTCAGCAA 489 457 1096 Antisense
AAGAGTCGACTTCCAAGAGCTCCAC 240 155 1135 Antisense
ACCTCCAGCTGTAACAACACCGGTC 114 89 1158 Antisense
AACACCGGTCCCTCGAATGAGTATT 182 119 1173 Antisense
GGAAGTTTGCCGGCATCTAGTTCTA 393 531 1198 Antisense
GTACCTCGCACAATGAGTTCGCCAG 118 457 1225 Antisense
ACCAGTTATGGGTGTTTCCTCCACA 204 87 1260 Antisense
ACTACTACAATGCCAACTACCTCAG 185 99 1312 Antisense
CTATGAATGTTGTTACCGCCAGTCC 464 223 1406 Antisense
AATGCACACATCTACGACGGGAGTC 338 165 1536 Antisense
Sequence Source Affymetrix Proprietary Database