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[183636_at]

Description F46B3.12 /REP_DB=WormBase Gene ID /WP=CE19872 /TR=Q9XV12 /GB=CAB04408.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 20      6grp_cgc > 73      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 43.9
(-3)
A 		51.8
(-2.3)
A 		43.4
(-3)
A 		118.2
(3)
P 		75
B 68.8
(3)
A 		46.4
(-3)
A 		47.7
(-2.7)
P 		53.1
(-1.2)
P 		22
C 46.6
(-0.5)
A 		61.6
(1)
A 		21
(-3)
A 		82
(3)
P 		61
avr 53.1
(-1) 		53.3
(-1) 		37.4
(-3) 		84.4
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 54.6
(0.5)
A 		36.1
(-1.9)
A 		74.1
(3)
P 		49.2
(-0.2)
A 		48.9
(-0.3)
P 		27.6
(-3)
A 		47
B 20.1
(-3)
A 		78.9
(3)
P 		30.8
(-1.9)
A 		36
(-1.4)
A 		43.6
(-0.6)
P 		39
(-1.1)
M 		59
C 19.7
(-3)
A 		58.1
(1.9)
P 		66.6
(3)
A 		33.5
(-1.2)
A 		40.1
(-0.4)
A 		30.3
(-1.6)
P 		47
avr 31.5
(-3) 		57.7
(3) 		57.2
(2.9) 		39.6
(-1.1) 		44.2
(-0.1) 		32.3
(-2.8) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 16
(1.7)
A 		11.2
(-3)
A 		11.4
(-2.8)
A 		17.3
(3)
P 		6
B 21.9
(3)
A 		11.5
(-2.8)
A 		11.1
(-3)
P 		11.3
(-2.9)
P 		11
C 15.4
(1.7)
A 		17.7
(3)
A 		7.3
(-3)
A 		13.8
(0.8)
P 		10
avr 17.8
(3) 		13.5
(-0.3) 		9.9
(-3) 		14.1
(0.2) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 10.1
(-0.8)
A 		12.8
(0.9)
A 		16.1
(3)
P 		12.5
(0.7)
A 		14.7
(2.1)
P 		6.7
(-3)
A 		9
B 7
(-3)
A 		26.3
(3)
P 		7.5
(-2.8)
A 		9.5
(-2.2)
A 		17.7
(0.3)
P 		14.6
(-0.6)
M 		19
C 7.3
(-2.7)
A 		17.7
(3)
P 		16.9
(2.6)
A 		6.7
(-3)
A 		13
(0.4)
A 		10.1
(-1.1)
P 		11
avr 8.1
(-3) 		18.9
(3) 		13.5
(0) 		9.6
(-2.2) 		15.1
(0.9) 		10.5
(-1.7) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183636_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14681
Sequence Type Exemplar sequence
Representative Public ID F46B3.12 NCBI
Target Description F46B3.12 /REP_DB=WormBase Gene ID /WP=CE19872 /TR=Q9XV12 /GB=CAB04408.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F46B3.12 ENSEMBL cdna:pseudogene chromosome:CEL140:V:20626473:20627853:1 gene:F46B3.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20626705-20627853(+) 100.0 100.0
Public Domain and Genome References
Ensembl F46B3.12
Sequence
Target Sequence 
>C. ELEGANS:183636_AT
atgctcatcctcactcaagtgtgcaactttctaatgtccctgttggccatccaaaagttc
tgtctatatttctacccatctaccaaacctcgtatcaatagtttaatgaagcaggtgaat
aaaatagcattgctatcaatttttctattcttcatcgagaaagtagcatatacgctagtg
tactctctattaacgcctggcattatttcaaaacctcaaatgcaatttctgttagcgatg
acaacatttgtgccaatttggtttctaattgcaatatccattttgtacattcccataatg
ataagtaagtacatcttagcgcaaaccttgatagtgatgctttttaagccggtttacttt
gaagttttcattgaatattttctaaatccaaatttttcgctctttcgagcttcaggcacg
ccaaaatttatcgacatagtttccactccaataattattcaattgtcgtatatatttagc
aacaaacggaatgtgaatactctctgctcttccttcaagtttatcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTCATCCTCACTCAAGTGTGCA 252 43 148 Antisense
AGTGTGCAACTTTCTAATGTCCCTG 614 59 165 Antisense
AGTTCTGTCTATATTTCTACCCATC 55 65 203 Antisense
CCATCTACCAAACCTCGTATCAATA 449 269 223 Antisense
GCTAGTGTACTCTCTATTAACGCCT 544 303 321 Antisense
ACGCCTGGCATTATTTCAAAACCTC 631 89 340 Antisense
GCAATATCCATTTTGTACATTCCCA 106 323 418 Antisense
TTTTCGCTCTTTCGAGCTTCAGGCA 486 675 541 Antisense
TTATCGACATAGTTTCCACTCCAAT 83 681 575 Antisense
GGAATGTGAATACTCTCTGCTCTTC 492 531 635 Antisense
TCTGCTCTTCCTTCAAGTTTATCAA 232 609 650 Antisense
Sequence Source Affymetrix Proprietary Database