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[183635_s_at]

Description C01G5.8 /REP_DB=WormBase Gene ID /WP=CE07800 /TR=P90740 /GB=AAB37739.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 86      6grp_highest_nonorm > 90      6grp_total > 76      4grp_total > 39      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 125.9
(3)
P 		61.8
(-3)
A 		73
(-2)
A 		93.2
(-0.1)
A 		64
B 117.3
(3)
P 		37.6
(-3)
M 		69.6
(-0.6)
P 		81.4
(0.3)
P 		80
C 100.5
(3)
P 		68.2
(-1.9)
A 		74.5
(-0.9)
P 		60.8
(-3)
M 		40
avr 114.6
(3) 		55.9
(-3) 		72.4
(-1.3) 		78.5
(-0.7) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 135.8
(-1.1)
P 		86.7
(-3)
P 		112.6
(-2)
P 		120.5
(-1.7)
P 		154.7
(-0.4)
P 		241.4
(3)
P 		155
B 98.9
(-2.3)
P 		112
(-1.8)
P 		81.1
(-3)
P 		143.9
(-0.6)
P 		118.2
(-1.6)
P 		238.6
(3)
P 		158
C 76.5
(-3)
P 		121.5
(-0.5)
P 		129.9
(-0.1)
P 		158.4
(1.5)
P 		109.1
(-1.2)
P 		186.3
(3)
P 		110
avr 103.7
(-3) 		106.7
(-2.8) 		107.9
(-2.8) 		140.9
(-1.1) 		127.3
(-1.8) 		222.1
(3) 		118
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 45.9
(3)
P 		13.4
(-3)
A 		19.1
(-1.9)
A 		13.6
(-3)
A 		33
B 37.4
(3)
P 		9.3
(-3)
M 		16.1
(-1.5)
P 		17.4
(-1.3)
P 		28
C 33.3
(3)
P 		19.6
(-0.6)
A 		26
(1.1)
P 		10.2
(-3)
M 		23
avr 38.9
(3) 		14.1
(-2.9) 		20.4
(-1.4) 		13.7
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 25
(-2.9)
P 		30.8
(-1.9)
P 		24.5
(-3)
P 		30.6
(-1.9)
P 		46.7
(0.9)
P 		58.8
(3)
P 		34
B 34.4
(-1.7)
P 		37.3
(-1.5)
P 		19.7
(-3)
P 		38.1
(-1.4)
P 		48
(-0.5)
P 		89
(3)
P 		69
C 28.4
(-3)
P 		37.1
(-1.5)
P 		33.1
(-2.2)
P 		31.8
(-2.4)
P 		35.3
(-1.8)
P 		62.4
(3)
P 		34
avr 29.3
(-2.5) 		35.1
(-1.7) 		25.8
(-3) 		33.5
(-2) 		43.3
(-0.6) 		70.1
(3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183635_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10713
Sequence Type Exemplar sequence
Representative Public ID C01G5.8 NCBI
Target Description C01G5.8 /REP_DB=WormBase Gene ID /WP=CE07800 /TR=P90740 /GB=AAB37739.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068596(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068596 NCBI Caenorhabditis elegans C01G5.8 (C01G5.8) mRNA, complete cds. 11/11 None
C01G5.8 ENSEMBL cdna:known chromosome:CEL140:IV:6548898:6552479:1 gene:C01G5.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004600 7/11 Cross Hyb Matching Probes None
GENEFINDER00000004609 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6548903-6552425(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01G5.8
Entrez Gene 177415 Entrez gene
SwissProt P90740 EMBL-EBI
WormBase CE07800 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:262242_AT expressed protein at
CANINE:1596148_AT similar to C01G5.8 cfa
CANINE:1589052_AT similar to C01G5.8 cfa
CANINE:1584457_AT similar to C01G5.8 cfa
CANINE_2:CFA.10556.1.A1_AT similar to C01G5.8 cfa
CANINE_2:CFA.20403.1.S1_A_AT similar to C01G5.8 cfa
CANINE_2:CFA.20403.1.S1_S_AT similar to C01G5.8 cfa
CANINE_2:CFA.20403.2.S1_AT similar to C01G5.8 cfa
CANINE_2:CFAAFFX.16191.1.S1_S_AT similar to C01G5.8 cfa
CHICKEN:GGA.10740.1.S1_S_AT similar to KIAA1018 protein gga
CHICKEN:GGAAFFX.26049.1.S1_AT similar to KIAA1018 protein gga
HG-U133A:203678_AT KIAA1018 protein hs
HG-U133_PLUS_2:203678_AT KIAA1018 protein hs
HG-U133A_2:203678_AT KIAA1018 protein hs
HU35KSUBA:AA126592_AT KIAA1018 protein hs
HU35KSUBA:RC_AA127238_AT KIAA1018 protein hs
U133_X3P:G7662449_3P_AT KIAA1018 protein hs
U133_X3P:HS.143981.0.A1_3P_AT KIAA1018 protein hs
HG-U133_PLUS_2:239289_X_AT KIAA1018 protein hs
HG-U133B:239289_X_AT KIAA1018 protein hs
HG-U95AV2:36458_AT KIAA1018 protein hs
HG-U95D:91115_AT KIAA1018 protein hs
HG-U133_PLUS_2:232016_AT Myotubularin related protein 10 hs
HG-U133B:232016_AT Myotubularin related protein 10 hs
U133_X3P:HS.147317.0.S1_3P_AT Myotubularin related protein 10 hs
HG-U95E:83006_AT Myotubularin related protein 10 hs
Protein Similarities
Method ID Description E-Value
blast AAB37739 Hypothetical protein C01G5.8 [Caenorhabditis elegans] ref|NP_500997.1| C01G5.8 [Caenorhabditis elegans] 0.0
blast CAE61521 Hypothetical protein CBG05421 [Caenorhabditis briggsae] 0.0
blast XP_693831 PREDICTED: similar to putative protein of ancient origin (4H315) [Danio rerio] 1.0E-68
Sequence
Target Sequence 
>C. ELEGANS:183635_S_AT
gaaggttccacgtggcatactctgttcggacttttcttttatgacgtcatcttcgcaacg
gatgaatcagttgaatccacgtggctcagtgagctgcaagattgtccgtctgatctcagt
aatactctgtattcgaaacgaaaagaaaagttcgaggaccgatttgtgtggttagaagag
gctgaacaggagcttattgaagaaaatattcgaaagatatgggatctgaagcacaacgaa
acgaatcgtgaatgttcgtggaagcagtttccaatgggtgctgaagattgcgtgagcttt
ttccaatgtattcctcgccccgcattgatattgattcttcgtcgtcttgctgaaaactat
cgaaattcgaggtctggatttcctgatttgacgctttggaatcctgaaacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGTTCCACGTGGCATACTCTGT 67 335 2056 Antisense
TACTCTGTTCGGACTTTTCTTTTAT 122 647 2073 Antisense
TATGACGTCATCTTCGCAACGGATG 16 657 2095 Antisense
GAATCAGTTGAATCCACGTGGCTCA 230 327 2119 Antisense
GGCTCAGTGAGCTGCAAGATTGTCC 42 539 2138 Antisense
AAGATTGTCCGTCTGATCTCAGTAA 67 157 2153 Antisense
GTTCGAGGACCGATTTGTGTGGTTA 627 433 2205 Antisense
CGCCCCGCATTGATATTGATTCTTC 119 257 2371 Antisense
GATTCTTCGTCGTCTTGCTGAAAAC 162 431 2388 Antisense
TCTGGATTTCCTGATTTGACGCTTT 255 607 2428 Antisense
TTGACGCTTTGGAATCCTGAAACCA 507 699 2443 Antisense
Sequence Source Affymetrix Proprietary Database