[Home] | [Total List]

[183634_at]

Description F26G5.1 /REP_DB=WormBase Gene ID /WP=CE28008 /TR=O16938 /GB=AAC48035.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 11      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 48.8
(-0.5)
A 		40.3
(-1.3)
A 		20.8
(-3)
A 		88.2
(3)
A 		67
B 36.7
(-1.8)
A 		27.7
(-3)
A 		28
(-3)
A 		73.6
(3)
A 		46
C 45.9
(-2.3)
A 		58.1
(-0.4)
A 		41.3
(-3)
A 		80.7
(3)
A 		39
avr 43.8
(-1.4) 		42
(-1.6) 		30
(-3) 		80.8
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 72.2
(-1.1)
A 		16.1
(-3)
A 		57.4
(-1.6)
A 		60.3
(-1.5)
A 		51.6
(-1.8)
A 		191.4
(3)
P 		175
B 26.6
(-2.6)
A 		56.9
(-1.7)
A 		35.6
(-2.3)
A 		11.3
(-3)
A 		125.9
(0.2)
P 		223
(3)
P 		212
C 65.7
(0.1)
A 		60.1
(-0.3)
A 		26.7
(-2.9)
A 		25.3
(-3)
A 		80.9
(1.3)
A 		102.7
(3)
P 		77
avr 54.8
(-2) 		44.4
(-2.5) 		39.9
(-2.7) 		32.3
(-3) 		86.1
(-0.7) 		172.4
(3) 		140
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 17.8
(3)
A 		8.7
(-1.4)
A 		5.4
(-3)
A 		12.9
(0.6)
A 		12
B 11.7
(0.4)
A 		6.8
(-2.8)
A 		6.5
(-3)
A 		15.7
(3)
A 		9
C 15.2
(0.1)
A 		16.7
(3)
A 		14.4
(-1.5)
A 		13.6
(-3)
A 		3
avr 14.9
(3) 		10.7
(-1.1) 		8.8
(-3) 		14.1
(2.2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 13.3
(-1.9)
A 		5.7
(-3)
A 		12.5
(-2)
A 		15.3
(-1.6)
A 		15.6
(-1.5)
A 		46.6
(3)
P 		41
B 9.2
(-2.5)
A 		18.9
(-1.8)
A 		8.7
(-2.6)
A 		3
(-3)
A 		51.2
(0.6)
P 		83.2
(3)
P 		80
C 24.3
(0.9)
A 		18.3
(-0.3)
A 		6.8
(-2.7)
A 		5.1
(-3)
A 		26.2
(1.3)
A 		34.4
(3)
P 		29
avr 15.6
(-2) 		14.3
(-2.2) 		9.3
(-2.8) 		7.8
(-3) 		31
(-0) 		54.7
(3) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183634_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15926
Sequence Type Exemplar sequence
Representative Public ID F26G5.1 NCBI
Target Description F26G5.1 /REP_DB=WormBase Gene ID /WP=CE28008 /TR=O16938 /GB=AAC48035.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071936(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071936 NCBI Caenorhabditis elegans F26G5.1 (F26G5.1) mRNA, complete cds. 11/11 None
SNAP00000021541 ENSEMBL cdna:SNAP chromosome:CEL140:V:4975308:4977238:1 11/11 None
GENEFINDER00000021549 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4975308:4977234:1 11/11 None
F26G5.1 ENSEMBL cdna:known chromosome:CEL140:V:4975173:4977276:1 gene:F26G5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4975172-4977238(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26G5.1
Entrez Gene 178888 Entrez gene
SwissProt O16938 EMBL-EBI
WormBase CE28008 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504337 F26G5.1 [Caenorhabditis elegans] gb|AAC48035.2| Hypothetical protein F26G5.1 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:183634_AT
gaagagcttcaccagtccgagaagtacatgttggattcgatactgaaatctttgtcagta
cgaatcgatcttgggccagctgaggtcgaatctacaccaagaaatcacccagccaagaag
gatcaattgggtgaacctatcccttcccgatcttcggtcccgactccaggatatctcacc
caagagccacttccatcttcacttccatttcaaatcgataaaaccactttgcaacaagat
tccaacgttatcaaccattttgcagtgaccaaacatcagatggagcaattggatttgcgt
cccgaaactgtgcgatcaaactcaaaagatcagaaacacctggacagctccgactttagt
tgggctgtagaccaagaaagctatgagacagacgatgaagatattgaggaagactatgag
cttgcaaacttggacgacataccacttccaccacttccgttctacccacgtgtacgctcc
gcaccaaagtatatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAGCTTCACCAGTCCGAGAAGT 378 339 1303 Antisense
ACGAATCGATCTTGGGCCAGCTGAG 153 91 1362 Antisense
GGCCAGCTGAGGTCGAATCTACACC 16 545 1376 Antisense
TCTACACCAAGAAATCACCCAGCCA 164 613 1393 Antisense
TCAATTGGGTGAACCTATCCCTTCC 40 633 1425 Antisense
CTCCAGGATATCTCACCCAAGAGCC 648 233 1466 Antisense
GGAGCAATTGGATTTGCGTCCCGAA 149 521 1584 Antisense
TGCGTCCCGAAACTGTGCGATCAAA 681 581 1598 Antisense
GGACAGCTCCGACTTTAGTTGGGCT 459 525 1644 Antisense
AACTTGGACGACATACCACTTCCAC 568 119 1729 Antisense
TGTACGCTCCGCACCAAAGTATATT 38 559 1773 Antisense
Sequence Source Affymetrix Proprietary Database