[Home] | [Total List]

[183633_at]

Description C49C3.15 /REP_DB=WormBase Gene ID /WP=CE19754 /TR=Q9XUF1 /GB=CAB05167.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 61      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 81      6grp_total > 61      4grp_total > 12      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 248
1 2 3 4 range
A 322.8
(-2.6)
P 		400.4
(-0.3)
P 		307.5
(-3)
P 		515.3
(3)
P 		208
B 374.2
(0.1)
P 		277.8
(-3)
P 		286.3
(-2.7)
P 		464
(3)
P 		186
C 356.7
(-0.1)
P 		289.8
(-2.3)
P 		267.7
(-3)
P 		449.5
(3)
P 		182
avr 351.2
(-1) 		322.7
(-1.9) 		287.2
(-3) 		476.3
(3) 		189

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 310
1 2 3 4 5 6 range
A 230.4
(-0.3)
P 		262.9
(1)
P 		311.9
(2.9)
P 		278.6
(1.6)
P 		314.1
(3)
P 		163.2
(-3)
P 		151
B 248.1
(-1.6)
P 		254.3
(-1.5)
P 		472.8
(3)
P 		396.8
(1.4)
P 		271.8
(-1.2)
P 		182.6
(-3)
P 		290
C 215.5
(-2.8)
P 		228.3
(-2.4)
P 		274
(-1.1)
P 		409.8
(3)
P 		209.1
(-3)
P 		230.5
(-2.4)
P 		201
avr 231.3
(-1.6) 		248.5
(-1) 		352.9
(2.7) 		361.7
(3) 		265
(-0.4) 		192.1
(-3) 		170
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 117.5
(3)
P 		86.9
(-1.4)
P 		80.4
(-2.3)
P 		75.4
(-3)
P 		42
B 119.3
(3)
P 		68.6
(-2.7)
P 		66.3
(-3)
P 		98.9
(0.7)
P 		53
C 118.1
(3)
P 		83.3
(-1.9)
P 		93.3
(-0.5)
P 		75.8
(-3)
P 		42
avr 118.3
(3) 		79.6
(-3) 		80
(-2.9) 		83.4
(-2.4) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 42.5
(-2.7)
P 		93.5
(2.9)
P 		67.9
(0.1)
P 		70.6
(0.4)
P 		94.8
(3)
P 		39.7
(-3)
P 		55
B 86.3
(-0.7)
P 		84.7
(-0.9)
P 		114.8
(3)
P 		105.1
(1.8)
P 		110.4
(2.4)
P 		68.1
(-3)
P 		47
C 79.9
(2)
P 		69.7
(-2.2)
P 		69.7
(-2.2)
P 		82.4
(3)
P 		67.7
(-3)
P 		77.2
(0.9)
P 		15
avr 69.6
(-1.4) 		82.6
(1.3) 		84.1
(1.6) 		86
(2) 		91
(3) 		61.7
(-3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183633_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9646
Sequence Type Exemplar sequence
Representative Public ID C49C3.15 NCBI
Target Description C49C3.15 /REP_DB=WormBase Gene ID /WP=CE19754 /TR=Q9XUF1 /GB=CAB05167.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070683(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070683 NCBI Caenorhabditis elegans C49C3.15 (C49C3.15) mRNA, complete cds. 11/11 None
GENEFINDER00000040215 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17332534:17336601:1 11/11 None
C49C3.15 ENSEMBL cdna:known chromosome:CEL140:IV:17334148:17334998:1 gene:C49C3.15 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040198 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17334128-17335004(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C49C3.15
Entrez Gene 183600 Entrez gene
SwissProt Q9XUF1 EMBL-EBI
WormBase CE37493 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05166 Hypothetical protein C49C3.7 [Caenorhabditis elegans] ref|NP_503083.1| C49C3.7 [Caenorhabditis elegans] 1.0E-151
blast CAB05161 Hypothetical protein C49C3.8 [Caenorhabditis elegans] ref|NP_503085.1| C49C3.8 [Caenorhabditis elegans] 1.0E-138
blast CAB05167 Hypothetical protein C49C3.15 [Caenorhabditis elegans] ref|NP_503084.2| C49C3.15 [Caenorhabditis elegans] 1.0E-114
blast CAB05167 Hypothetical protein C49C3.15 [Caenorhabditis elegans] ref|NP_503084.2| C49C3.15 [Caenorhabditis elegans] 1.0E-112
Sequence
Target Sequence 
>C. ELEGANS:183633_AT
gaacaagcacccaaatcttcagctacagttgcaccaaaatctgcaagtccacgaaaaata
attgctcggttcaaaatcgatagtcgtaaacttcaaatggaagtagcaaaacaaagtgct
gctgaggctgctgctgtcgatgtggcttcaacatcagcgtccagctccgatgcgcaagaa
ttgacaatattgagagaaaaattaaaactatccgaggagagaaatttcagtttggagact
cgcctgaaaatgcaagaagcagcgtttcacaggaaacttcaagaagttaaaaacgaacaa
gatgccgatatgaagcaaaagtacactatattggaaaactatagtgttatgtgcaaaaag
aacaacttgcaattggtggcggagttgaaagaggcgaaatgtgaaattgaaaagaagacg
agagaatgtgctgatttgaaaatggcagcggctttctacaaatccagtagcaaatatgct
tcgactattactccccagcgaaagcaagttgtgagtccaggcaaggattcgagtccatca
acgtccactgcaaaagtcgtgaaacctgcagagtcacccttagcagcagcaggcaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACAAGCACCCAAATCTTCAGCTA 184 353 211 Antisense
AATCTTCAGCTACAGTTGCACCAAA 254 169 224 Antisense
AACAAAGTGCTGCTGAGGCTGCTGC 57 133 320 Antisense
GATGTGGCTTCAACATCAGCGTCCA 255 409 349 Antisense
GAAATTTCAGTTTGGAGACTCGCCT 698 361 431 Antisense
ATGGCAGCGGCTTTCTACAAATCCA 181 53 652 Antisense
AAATATGCTTCGACTATTACTCCCC 499 115 682 Antisense
ATTACTCCCCAGCGAAAGCAAGTTG 577 11 697 Antisense
AAGGATTCGAGTCCATCAACGTCCA 86 161 733 Antisense
GTCGTGAAACCTGCAGAGTCACCCT 445 473 766 Antisense
TCACCCTTAGCAGCAGCAGGCAAAG 326 627 784 Antisense
Sequence Source Affymetrix Proprietary Database