[Home] | [Total List]

[183632_at]

Description R02F2.6 /REP_DB=WormBase Gene ID /WP=CE00770 /TR=Q21647 /GB=AAA50722.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 15      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 29.1
(3)
A 		6.3
(-2.5)
A 		7.5
(-2.2)
A 		4.2
(-3)
A 		25
B 33.2
(3)
A 		4.6
(-3)
A 		5.1
(-2.9)
A 		31
(2.5)
A 		29
C 4.8
(-2.6)
A 		3.6
(-3)
A 		22.6
(3)
A 		15
(0.6)
A 		19
avr 22.4
(3) 		4.8
(-3) 		11.7
(-0.6) 		16.7
(1.1) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 19.6
(3)
A 		11.4
(0.2)
A 		17.8
(2.4)
A 		5.9
(-1.7)
A 		2.1
(-3)
A 		3.5
(-2.5)
A 		18
B 4.4
(-1.9)
A 		6.3
(0.1)
A 		6.2
(0)
A 		9.1
(3)
A 		5.7
(-0.5)
A 		3.3
(-3)
A 		6
C 1.8
(-3)
A 		21.3
(1.9)
A 		5.3
(-2.1)
A 		12.2
(-0.4)
A 		25.8
(3)
A 		3.8
(-2.5)
A 		24
avr 8.6
(0.2) 		13
(3) 		9.8
(1) 		9.1
(0.5) 		11.2
(1.9) 		3.5
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 10.6
(3)
A 		1.4
(-2.5)
A 		1.9
(-2.2)
A 		0.6
(-3)
A 		10
B 10.6
(3)
A 		1.1
(-3)
A 		1.2
(-2.9)
A 		6.6
(0.5)
A 		10
C 1.6
(-2.5)
A 		1
(-3)
A 		7.9
(3)
A 		2.5
(-1.7)
A 		7
avr 7.6
(3) 		1.2
(-3) 		3.7
(-0.7) 		3.2
(-1.1) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 3.6
(2.1)
A 		4.1
(3)
A 		3.9
(2.7)
A 		1.5
(-1.5)
A 		0.6
(-3)
A 		0.8
(-2.7)
A 		4
B 1.5
(-1.5)
A 		2.1
(1.5)
A 		1.5
(-1.5)
A 		2.4
(3)
A 		2.3
(2.5)
A 		1.2
(-3)
A 		1
C 0.7
(-3)
A 		6.5
(1.6)
A 		1.3
(-2.5)
A 		2.4
(-1.7)
A 		8.3
(3)
A 		1.3
(-2.5)
A 		8
avr 1.9
(-1.5) 		4.2
(3) 		2.2
(-0.9) 		2.1
(-1.1) 		3.7
(2) 		1.1
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183632_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7879
Sequence Type Exemplar sequence
Representative Public ID R02F2.6 NCBI
Target Description R02F2.6 /REP_DB=WormBase Gene ID /WP=CE00770 /TR=Q21647 /GB=AAA50722.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065767(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065767 NCBI Caenorhabditis elegans R02F2.6 (R02F2.6) mRNA, complete cds. 11/11 None
R02F2.6 ENSEMBL cdna:known chromosome:CEL140:III:5478638:5478880:-1 gene:R02F2.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000033083 10/11 Negative Strand Matching Probes None
SNAP00000033067 10/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5478636-5478879(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R02F2.6
Entrez Gene 187529 Entrez gene
SwissProt Q21647 EMBL-EBI
WormBase CE00770 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA50722 Hypothetical protein R02F2.6 [Caenorhabditis elegans] ref|NP_498168.1| R02F2.6 [Caenorhabditis elegans] 2.0E-20
Sequence
Target Sequence 
>C. ELEGANS:183632_AT
ttgagccccatacgcaggaggcggttgtggctggtacgggagacctggagacggttgttg
acgttgaggttgtggaggcttctgtccattgggaggtggagcttgttgctgctgctgctg
tcgaggtggaggtggaggttgattcctattctgaggttgattctgggcaggataggggcc
tgattgggttccggtttgattctgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGAGCCCCATACGCAGGAGGCGGT 145 703 20 Antisense
CGCAGGAGGCGGTTGTGGCTGGTAC 691 251 32 Antisense
GTGGCTGGTACGGGAGACCTGGAGA 265 487 46 Antisense
GACCTGGAGACGGTTGTTGACGTTG 295 383 61 Antisense
GACGTTGAGGTTGTGGAGGCTTCTG 196 369 79 Antisense
GAGGCTTCTGTCCATTGGGAGGTGG 158 405 94 Antisense
TTGGGAGGTGGAGCTTGTTGCTGCT 404 709 108 Antisense
GAGGTGGAGGTTGATTCCTATTCTG 288 401 148 Antisense
CCTATTCTGAGGTTGATTCTGGGCA 490 269 164 Antisense
GGATAGGGGCCTGATTGGGTTCCGG 628 509 189 Antisense
GATTGGGTTCCGGTTTGATTCTGAA 625 433 201 Antisense
Sequence Source Affymetrix Proprietary Database