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[183631_at]

Description C08F11.5 /REP_DB=WormBase Gene ID /WP=CE17383 /TR=Q9U3Q8 /GB=CAB62781.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 61      4grp_highest_8_8 > 63      4grp_high_8_8 > 28      6grp_highest_nonorm > 80      6grp_total > 61      4grp_total > 36      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 122.6
(3)
P 		111.7
(-0.9)
P 		105.9
(-3)
P 		119.9
(2)
P 		17
B 123.9
(1.1)
P 		97
(-3)
P 		136
(3)
P 		116.4
(-0)
P 		39
C 121
(-1.2)
P 		184
(3)
P 		93.3
(-3)
P 		141.1
(0.2)
P 		91
avr 122.5
(0.4) 		130.9
(3) 		111.7
(-3) 		125.8
(1.4) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 244
1 2 3 4 5 6 range
A 122.3
(-2.3)
P 		178.8
(-0.9)
P 		314.5
(2.4)
P 		339
(3)
P 		139.7
(-1.9)
P 		95
(-3)
P 		244
B 130
(-3)
P 		212.1
(-0.4)
P 		322.7
(3)
P 		297.6
(2.2)
P 		188.8
(-1.2)
P 		132.4
(-2.9)
P 		193
C 131.5
(-3)
P 		261.2
(1.6)
P 		146
(-2.5)
P 		301.3
(3)
P 		173.3
(-1.5)
P 		153.3
(-2.2)
P 		170
avr 127.9
(-3) 		217.4
(-0.1) 		261.1
(1.3) 		312.6
(3) 		167.3
(-1.7) 		126.9
(-3) 		186
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 44.6
(3)
P 		24.2
(-1.5)
P 		27.7
(-0.8)
P 		17.6
(-3)
P 		27
B 39.5
(3)
P 		24
(-3)
P 		31.5
(-0.1)
P 		24.8
(-2.7)
P 		16
C 40.1
(0.4)
P 		52.9
(3)
P 		32.5
(-1.2)
P 		23.8
(-3)
P 		29
avr 41.4
(3) 		33.7
(0.6) 		30.6
(-0.4) 		22.1
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 22.5
(-3)
P 		63.6
(0.9)
P 		68.5
(1.3)
P 		86
(3)
P 		42.2
(-1.1)
P 		23.1
(-2.9)
P 		64
B 45.2
(-3)
P 		70.6
(1.5)
P 		78.4
(2.9)
P 		78.8
(3)
P 		76.7
(2.6)
P 		49.4
(-2.3)
P 		34
C 48.7
(-1.4)
P 		79.7
(3)
P 		37.1
(-3)
P 		60.6
(0.3)
P 		56.1
(-0.3)
P 		51.3
(-1)
P 		43
avr 38.8
(-3) 		71.3
(2.4) 		61.3
(0.7) 		75.1
(3) 		58.3
(0.2) 		41.3
(-2.6) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183631_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10212
Sequence Type Exemplar sequence
Representative Public ID C08F11.5 NCBI
Target Description C08F11.5 /REP_DB=WormBase Gene ID /WP=CE17383 /TR=Q9U3Q8 /GB=CAB62781.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070230(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070230 NCBI Caenorhabditis elegans C08F11.5 (C08F11.5) mRNA, complete cds. 11/11 None
GENEFINDER00000042613 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13633468:13638494:1 11/11 None
C08F11.5 ENSEMBL cdna:known chromosome:CEL140:IV:13633468:13635192:1 gene:C08F11.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042600 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13633473-13635117(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08F11.5
Entrez Gene 182421 Entrez gene
SwissProt Q9U3Q8 EMBL-EBI
WormBase CE17383 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB62781 Hypothetical protein C08F11.5 [Caenorhabditis elegans] ref|NP_502631.1| C08F11.5 [Caenorhabditis elegans] 1.0E-180
blast CAB62781 Hypothetical protein C08F11.5 [Caenorhabditis elegans] ref|NP_502631.1| C08F11.5 [Caenorhabditis elegans] 1.0E-179
blast CAB62782 Hypothetical protein C08F11.7 [Caenorhabditis elegans] ref|NP_502632.1| C08F11.7 [Caenorhabditis elegans] 1.0E-123
blast CAB07206 Hypothetical protein F47H4.7 [Caenorhabditis elegans] ref|NP_507390.1| F47H4.7 [Caenorhabditis elegans] 5.0E-33
blast CAB07206 Hypothetical protein F47H4.7 [Caenorhabditis elegans] ref|NP_507390.1| F47H4.7 [Caenorhabditis elegans] 3.0E-32
blast CAB05520 Hypothetical protein F44G3.8 [Caenorhabditis elegans] ref|NP_507061.1| F44G3.8 [Caenorhabditis elegans] 4.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.8E-50
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.7E-10
Pfam IPR006570 EMBL-EBI SPK 4.8E-32
Sequence
Target Sequence 
>C. ELEGANS:183631_AT
gttcagctagattattttggccttgtcattgccggagatcaaacatgccgctttgaaaat
gttctggaaatgcttcagtctttgaattttaaactttgtgtcaagaatttcagtgttgcc
agattcccactgaaatatgtgatttcattttttaaatgtttggcggcggaacaaattgaa
aatattaccttttattctgatgaatacgacgaagaaaacccaaaagaactagtaaaactg
gaacagtggaaaaaagcaaagtttattgaaatttacggaggttacacttttccatttaaa
gtggaagatttccttcatttcacaacattttgggttcggctgggccattttacaacggag
gatgctgcaaaagttagagatgtgctcatgaaacctaacaatataaactatggatacttt
gatttttccatttatgaccccatagcaattgcaagaatatttgaaccaaattacaatggc
ccatcctatggagcattacgtgtgcattctactggcggaattttcagcgcggttttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCAGCTAGATTATTTTGGCCTTG 380 445 376 Antisense
TTTGGCCTTGTCATTGCCGGAGATC 6 667 391 Antisense
GCCGGAGATCAAACATGCCGCTTTG 546 283 406 Antisense
GTGTTGCCAGATTCCCACTGAAATA 283 485 488 Antisense
AGATTTCCTTCATTTCACAACATTT 528 65 681 Antisense
CACAACATTTTGGGTTCGGCTGGGC 327 195 696 Antisense
TCGGCTGGGCCATTTTACAACGGAG 76 599 711 Antisense
GATTTTTCCATTTATGACCCCATAG 441 427 796 Antisense
ACAATGGCCCATCCTATGGAGCATT 426 113 848 Antisense
ATTACGTGTGCATTCTACTGGCGGA 514 13 870 Antisense
TGGCGGAATTTTCAGCGCGGTTTTC 321 513 888 Antisense
Sequence Source Affymetrix Proprietary Database