[Home] | [Total List]

[183630_at]

Description C29F9.3 /REP_DB=WormBase Gene ID /WP=CE08451 /TR=Q9TZB5 /GB=AAC68746.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 61      6grp_highest_nonorm > 71      6grp_total > 61      4grp_total > 54      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 269
(3)
P 		121
(-1.4)
P 		130.9
(-1.1)
P 		68.2
(-3)
A 		201
B 218.8
(3)
P 		135.2
(-0.2)
P 		118.8
(-0.8)
P 		60.8
(-3)
A 		158
C 269.6
(3)
P 		144
(-1.5)
P 		161.5
(-0.9)
P 		102.1
(-3)
A 		168
avr 252.5
(3) 		133.4
(-1.1) 		137.1
(-0.9) 		77
(-3) 		176

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 496
1 2 3 4 5 6 range
A 237.5
(-2.9)
P 		310.5
(-1.7)
P 		563.5
(2.3)
P 		605.9
(3)
P 		310
(-1.8)
P 		232.3
(-3)
P 		374
B 289.5
(-1.4)
P 		355.3
(-0.2)
P 		539.4
(3)
P 		506
(2.4)
P 		294
(-1.3)
P 		197.8
(-3)
P 		342
C 206
(-3)
P 		367.4
(-1)
P 		497.5
(0.6)
P 		694.1
(3)
P 		251
(-2.4)
P 		225.2
(-2.8)
P 		488
avr 244.3
(-2.6) 		344.4
(-1) 		533.5
(1.9) 		602
(3) 		285
(-2) 		218.4
(-3) 		384
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 97.9
(3)
P 		26.3
(-1.9)
P 		34.2
(-1.3)
P 		10
(-3)
A 		88
B 69.8
(3)
P 		33.4
(-0.8)
P 		27.5
(-1.5)
P 		12.9
(-3)
A 		57
C 89.2
(3)
P 		41.4
(-1)
P 		56.3
(0.3)
P 		17.2
(-3)
A 		72
avr 85.6
(3) 		33.7
(-1.3) 		39.3
(-0.8) 		13.4
(-3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 43.8
(-3)
P 		110.4
(0.6)
P 		122.7
(1.3)
P 		153.7
(3)
P 		93.6
(-0.3)
P 		56.6
(-2.3)
P 		110
B 100.7
(-0.3)
P 		118.3
(1.4)
P 		131
(2.7)
P 		134
(3)
P 		119.4
(1.5)
P 		73.8
(-3)
P 		60
C 76.4
(-2.9)
P 		112.1
(0.4)
P 		126.6
(1.8)
P 		139.6
(3)
P 		81.2
(-2.5)
P 		75.4
(-3)
P 		64
avr 73.6
(-2.6) 		113.6
(0.7) 		126.8
(1.7) 		142.4
(3) 		98.1
(-0.6) 		68.6
(-3) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183630_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8110
Sequence Type Exemplar sequence
Representative Public ID C29F9.3 NCBI
Target Description C29F9.3 /REP_DB=WormBase Gene ID /WP=CE08451 /TR=Q9TZB5 /GB=AAC68746.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171055(11), NM_171857(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171055 NCBI Caenorhabditis elegans C29F9.3a (C29F9.3) mRNA, complete cds. 11/11 None
NM_171857 NCBI Caenorhabditis elegans C29F9.3c (C29F9.3) mRNA, complete cds. 10/11 None
SNAP00000042031 ENSEMBL cdna:SNAP chromosome:CEL140:III:123179:126418:1 11/11 None
GENEFINDER00000042042 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:124804:126418:1 11/11 None
C29F9.3b ENSEMBL cdna:known chromosome:CEL140:III:124777:126462:1 gene:C29F9.3 11/11 None
C29F9.3a.1 ENSEMBL cdna:known chromosome:CEL140:III:124777:126418:1 gene:C29F9.3 11/11 None
C29F9.3c ENSEMBL cdna:known chromosome:CEL140:III:124790:126418:1 gene:C29F9.3 10/11 None
C29F9.3a.2 ENSEMBL cdna:known chromosome:CEL140:III:124790:126418:1 gene:C29F9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
3565025 3 2 NM_171055 183630_at (11)
NM_171857 183630_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:123969-126418(+) 95.33 95.33
Public Domain and Genome References
Ensembl C29F9.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T33583 hypothetical protein C29F9.3 - Caenorhabditis elegans 0.0
blast AAK93839 Hypothetical protein C29F9.3a [Caenorhabditis elegans] ref|NP_741062.1| C29F9.3a [Caenorhabditis elegans] 1.0E-170
blast AAM22044 Hypothetical protein C29F9.3c [Caenorhabditis elegans] ref|NP_741063.1| C29F9.3c [Caenorhabditis elegans] 1.0E-160
blast AAM22044 Hypothetical protein C29F9.3c [Caenorhabditis elegans] ref|NP_741063.1| C29F9.3c [Caenorhabditis elegans] 1.0E-157
blast AAK93839 Hypothetical protein C29F9.3a [Caenorhabditis elegans] ref|NP_741062.1| C29F9.3a [Caenorhabditis elegans] 1.0E-157
Sequence
Target Sequence 
>C. ELEGANS:183630_AT
tggcgaactcgcagacagtctgatcaacaacttcagagtgcaaatttccagtctcaacag
cgttaaacaagaactaacaagaaagcgggaacgtgtaggaaacgctaagccaaccattga
taaatttcaaaccattttatactggaccaatgcgattaggacaaatatgtcgatcattgg
agctattatttacccaatgcaaaggacggttgtaaaagtcaatgccaagacactaaattc
tcaattttctgcgatgcaaaaaaaccgagaaatacttgaacaatgtcatgacaagttcaa
agagttcctgaataacgacgctcgtgttcctccagaactatttgaatccttctcgagatt
ccaacttaatttggcggaattgatgaacaacgcggatttcatcgcagtctgcacacatct
atcgaaagcagttgaagaaaataacgaggaaatgattttgtattacggaaagaaagttag
agccttgaaccagtatttcgcaaaagtcaccggcgataccgaggaagaactacatcaaat
tgtgctcgagaatgttcaagagcccacttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCGAACTCGCAGACAGTCTGATC 617 543 1038 Antisense
GCAAATTTCCAGTCTCAACAGCGTT 670 317 1077 Antisense
GGAGCTATTATTTACCCAATGCAAA 522 521 1216 Antisense
TGAATAACGACGCTCGTGTTCCTCC 30 577 1346 Antisense
GTTCCTCCAGAACTATTTGAATCCT 594 441 1363 Antisense
ATCCTTCTCGAGATTCCAACTTAAT 224 39 1383 Antisense
TGAACAACGCGGATTTCATCGCAGT 468 573 1421 Antisense
ATCGCAGTCTGCACACATCTATCGA 75 37 1438 Antisense
AGAGCCTTGAACCAGTATTTCGCAA 15 69 1516 Antisense
GCAAAAGTCACCGGCGATACCGAGG 350 317 1537 Antisense
TCGAGAATGTTCAAGAGCCCACTTC 153 603 1583 Antisense
Sequence Source Affymetrix Proprietary Database