[Home] | [Total List]

[183629_at]

Description F55G11.6 /REP_DB=WormBase Gene ID /WP=CE18752 /TR=Q9XUE1 /GB=CAB05215.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 37      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 62.1
(3)
A 		35
(-3)
A 		42
(-1.5)
A 		52
(0.8)
A 		27
B 54.5
(1.1)
A 		75.4
(3)
P 		8.3
(-3)
A 		44.7
(0.3)
A 		67
C 39.7
(1.9)
A 		45
(3)
A 		24.5
(-1.3)
A 		16.4
(-3)
A 		29
avr 52.1
(3) 		51.8
(2.9) 		24.9
(-3) 		37.7
(-0.2) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 49.7
(3)
A 		4
(-3)
A 		16.1
(-1.4)
A 		32.7
(0.8)
A 		7.9
(-2.5)
A 		20.8
(-0.8)
A 		46
B 5.9
(-3)
A 		6.9
(-2.8)
A 		30.3
(1.2)
A 		14.4
(-1.5)
A 		40.7
(3)
A 		14.4
(-1.5)
A 		35
C 29.9
(1.5)
A 		38.1
(3)
A 		36.3
(2.7)
A 		5.6
(-3)
A 		15.9
(-1.1)
A 		6.4
(-2.9)
A 		33
avr 28.5
(3) 		16.3
(-2) 		27.6
(2.6) 		17.6
(-1.5) 		21.5
(0.1) 		13.9
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 22.6
(3)
A 		7.6
(-3)
A 		11
(-1.6)
A 		7.6
(-3)
A 		15
B 17.4
(2.6)
A 		18.6
(3)
P 		1.9
(-3)
A 		9.5
(-0.3)
A 		17
C 13.1
(3)
A 		12.9
(2.9)
A 		8.5
(0.3)
A 		2.8
(-3)
A 		10
avr 17.7
(3) 		13
(0.5) 		7.1
(-2.7) 		6.6
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 9.2
(3)
A 		1.4
(-3)
A 		3.5
(-1.4)
A 		8.3
(2.3)
A 		2.4
(-2.2)
A 		5.1
(-0.2)
A 		8
B 2.1
(-3)
A 		2.3
(-2.9)
A 		7.4
(-0.8)
A 		3.8
(-2.3)
A 		16.6
(3)
A 		5.4
(-1.6)
A 		15
C 11.1
(2.7)
A 		11.6
(3)
A 		9.2
(1.6)
A 		1.1
(-3)
A 		5.2
(-0.7)
A 		2.2
(-2.4)
A 		11
avr 7.5
(2.1) 		5.1
(-1.6) 		6.7
(0.8) 		4.4
(-2.7) 		8.1
(3) 		4.2
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183629_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9630
Sequence Type Exemplar sequence
Representative Public ID F55G11.6 NCBI
Target Description F55G11.6 /REP_DB=WormBase Gene ID /WP=CE18752 /TR=Q9XUE1 /GB=CAB05215.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070078(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070078 NCBI Caenorhabditis elegans F55G11.6 (F55G11.6) mRNA, complete cds. 11/11 None
SNAP00000016141 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12958000:12959564:1 11/11 None
GENEFINDER00000016155 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12958000:12967213:1 10/11 None
F55G11.6 ENSEMBL cdna:known chromosome:CEL140:IV:12958000:12959564:1 gene:F55G11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12958005-12959570(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55G11.6
Entrez Gene 186339 Entrez gene
SwissProt Q9XUE1 EMBL-EBI
WormBase CE18752 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05215 Hypothetical protein F55G11.6 [Caenorhabditis elegans] ref|NP_502479.1| F55G11.6 [Caenorhabditis elegans] 0.0
blast CAB05221 Hypothetical protein F55G11.7 [Caenorhabditis elegans] ref|NP_502480.1| F55G11.7 [Caenorhabditis elegans] 0.0
blast CAB05220 Hypothetical protein F55G11.8 [Caenorhabditis elegans] ref|NP_502481.1| F55G11.8 [Caenorhabditis elegans] 0.0
blast CAB05216 Hypothetical protein F55G11.5 [Caenorhabditis elegans] ref|NP_502482.1| Downstream Of DAF-16 (regulated by DAF-16) family member (dod-22) [Caenorhabditis elegans] 0.0
blast CAB05221 Hypothetical protein F55G11.7 [Caenorhabditis elegans] ref|NP_502480.1| F55G11.7 [Caenorhabditis elegans] 1.0E-149
blast CAB05221 Hypothetical protein F55G11.7 [Caenorhabditis elegans] ref|NP_502480.1| F55G11.7 [Caenorhabditis elegans] 1.0E-145
blast CAB05220 Hypothetical protein F55G11.8 [Caenorhabditis elegans] ref|NP_502481.1| F55G11.8 [Caenorhabditis elegans] 1.0E-132
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.6E-48
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 5.5E-46
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 9.7E-48
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.0E-50
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 4.5E-50
Sequence
Target Sequence 
>C. ELEGANS:183629_AT
ttccttcttccatatgtgggcgacgatgcaggaatcgggccaagtggattggttgtgaat
gtaacgagtaaagtttatgctatcgattaccattcaactgacgacttacttacattgatg
actttccctgcagacacaaaaaattattattcattgagaagtgcacttgtatttgcaggg
gaaggtttgtcaaactatattacaaatctctacctactctatcaaacgaaaaagccatgg
atatccagtgacgacgctatcacaatagtgaactttgaagccgctagttctaatgataat
ctactaattcaatcctctaaatatttgactggaatcggtgagatggtggagcttcaccct
caggccaattcaatctataacggaactgtaaacggaggaacactgatgtcatcactcgtt
gcagtgactgatctcccaatgcaaatgattgatgttcagatgaaaagtgacgctaccgtt
acagtttactatggttctccagactcatcaactcttaataaaacttacactggagcacaa
ctgaaaaatgcgcttccattatcgtttagtggagacgtcgtgcagtttgtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCTTCTTCCATATGTGGGCGACG 679 699 406 Antisense
TATGCTATCGATTACCATTCAACTG 180 657 481 Antisense
CATTCAACTGACGACTTACTTACAT 694 213 496 Antisense
TACATTGATGACTTTCCCTGCAGAC 357 645 516 Antisense
AATCTCTACCTACTCTATCAAACGA 310 167 610 Antisense
CATGGATATCCAGTGACGACGCTAT 41 211 641 Antisense
CACTGATGTCATCACTCGTTGCAGT 36 199 806 Antisense
GTTGCAGTGACTGATCTCCCAATGC 409 439 823 Antisense
GAAAAGTGACGCTACCGTTACAGTT 11 353 867 Antisense
AAAATGCGCTTCCATTATCGTTTAG 444 133 950 Antisense
AGTGGAGACGTCGTGCAGTTTGTGG 13 59 973 Antisense
Sequence Source Affymetrix Proprietary Database