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[183628_at]

Description C14C6.7 /REP_DB=WormBase Gene ID /WP=CE27361 /TR=O44671 /GB=AAB94265.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 48      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 2.2
(-3)
A 		5.2
(-0.1)
A 		8.5
(3)
A 		3
(-2.2)
A 		6
B 1.9
(-2.8)
A 		14.5
(0.3)
A 		25.1
(3)
A 		1.2
(-3)
A 		24
C 1.6
(-3)
A 		11.1
(-0.3)
A 		22.5
(3)
A 		6
(-1.7)
A 		21
avr 1.9
(-3) 		10.3
(0) 		18.7
(3) 		3.4
(-2.5) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 8.5
(-1.2)
A 		15
(0.4)
A 		25.5
(3)
A 		12.9
(-0.1)
A 		15.3
(0.5)
A 		1.1
(-3)
A 		24
B 1.7
(-2.8)
A 		22.5
(2)
P 		26.9
(3)
A 		1.3
(-2.9)
A 		0.9
(-3)
A 		2.3
(-2.7)
A 		26
C 1.1
(-2.8)
A 		13.9
(2.4)
A 		15.3
(3)
A 		6.3
(-0.7)
A 		0.7
(-3)
A 		5.5
(-1)
A 		15
avr 3.8
(-2.8) 		17.1
(1.3) 		22.6
(3) 		6.8
(-1.8) 		5.6
(-2.2) 		3
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.8
(-1.7)
A 		1.1
(-0.7)
A 		2.2
(3)
A 		0.4
(-3)
A 		2
B 0.6
(-2.6)
A 		3.6
(0.6)
A 		5.8
(3)
A 		0.2
(-3)
A 		6
C 0.5
(-3)
A 		3.2
(-0.8)
A 		7.9
(3)
A 		1
(-2.6)
A 		7
avr 0.6
(-2.9) 		2.6
(-0.4) 		5.3
(3) 		0.5
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.6
(-1.5)
A 		5.4
(2.8)
A 		5.6
(3)
A 		3.3
(0.4)
A 		4.6
(1.9)
A 		0.3
(-3)
A 		5
B 0.6
(-2.8)
A 		7.5
(3)
P 		6.5
(2.2)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0.9
(-2.5)
A 		7
C 0.4
(-2.7)
A 		4.3
(3)
A 		3.9
(2.4)
A 		1.3
(-1.4)
A 		0.2
(-3)
A 		1.8
(-0.7)
A 		4
avr 0.9
(-3) 		5.7
(3) 		5.3
(2.5) 		1.6
(-2.1) 		1.7
(-2) 		1
(-2.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183628_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14941
Sequence Type Exemplar sequence
Representative Public ID C14C6.7 NCBI
Target Description C14C6.7 /REP_DB=WormBase Gene ID /WP=CE27361 /TR=O44671 /GB=AAB94265.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070841(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070841 NCBI Caenorhabditis elegans C14C6.7 (C14C6.7) mRNA, complete cds. 10/11 None
SNAP00000017695 ENSEMBL cdna:SNAP chromosome:CEL140:V:548544:552427:-1 10/11 None
GENEFINDER00000017709 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:548544:552996:-1 10/11 None
C14C6.7 ENSEMBL cdna:known chromosome:CEL140:V:548531:550482:-1 gene:C14C6.7 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:548543-550216(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C14C6.7
Entrez Gene 178575 Entrez gene
SwissProt O44671 EMBL-EBI
WormBase CE27361 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94265 Hypothetical protein C14C6.7 [Caenorhabditis elegans] ref|NP_503242.1| C14C6.7 [Caenorhabditis elegans] 0.0
blast AAB69952 Hypothetical protein ZK488.5 [Caenorhabditis elegans] ref|NP_503257.1| ZK488.5 [Caenorhabditis elegans] 0.0
blast AAB69953 Hypothetical protein ZK488.6 [Caenorhabditis elegans] ref|NP_503256.1| ZK488.6 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 2.4E-121
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503242.1 1 20-42
C14C6.7 1 20-42
Sequence
Target Sequence 
>C. ELEGANS:183628_AT
accaccgaagcaagtatttctcgaaatggacagcatttatagatattgatgagcggctgg
aaatgaacaataacaaattcacaagagtcgctgtttatttggacacaatccaagactctt
tcatagcaaatcttcatttccgcgttaagtgggtcatgaagcacaaatatacaccggaga
gatacaaaactgaggcgcagctgaaaagggagatgctcttccacaagtaccagaacatat
ctcaaatcggtgcgatttgggaccaaccaaagtgtataattcgcccggaaaacgtcggga
taatgtctattcacggacctcgagagata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCACCGAAGCAAGTATTTCTCGAA 601 83 740 Antisense
GAGTCGCTGTTTATTTGGACACAAT 24 401 824 Antisense
TGGACACAATCCAAGACTCTTTCAT 47 547 839 Antisense
CATAGCAAATCTTCATTTCCGCGTT 140 211 861 Antisense
TCATTTCCGCGTTAAGTGGGTCATG 79 609 873 Antisense
AAGGGAGATGCTCTTCCACAAGTAC 597 159 945 Antisense
CAGAACATATCTCAAATCGGTGCGA 261 205 970 Antisense
AATCGGTGCGATTTGGGACCAACCA 466 169 984 Antisense
CAACCAAAGTGTATAATTCGCCCGG 360 87 1003 Antisense
AAACGTCGGGATAATGTCTATTCAC 364 127 1029 Antisense
GTCTATTCACGGACCTCGAGAGATA 264 469 1044 Antisense
Sequence Source Affymetrix Proprietary Database