[Home] | [Total List]

[183627_at]

Description T10E9.5 /REP_DB=WormBase Gene ID /WP=CE13551 /TR=O01599 /GB=AAB52468.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 35      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_total > 36      4grp_total > 21      6grp_high1_sub > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 131.1
(-0.3)
P 		132
(-0.3)
P 		68
(-3)
P 		208.8
(3)
P 		141
B 152.4
(3)
P 		109.6
(-1.6)
P 		96.1
(-3)
P 		121.1
(-0.3)
P 		56
C 154.7
(2.3)
P 		78.4
(-2.1)
P 		62.1
(-3)
P 		167.5
(3)
P 		105
avr 146.1
(1.7) 		106.7
(-0.9) 		75.4
(-3) 		165.8
(3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 112.1
(1.3)
P 		130.5
(3)
P 		102.9
(0.5)
P 		82.3
(-1.4)
P 		64.8
(-3)
M 		104
(0.6)
P 		66
B 89.5
(1.7)
P 		99
(3)
P 		66.3
(-1.4)
P 		81
(0.6)
P 		54.5
(-3)
P 		64.7
(-1.6)
P 		45
C 154.2
(3)
P 		115.2
(1.1)
P 		49.8
(-2.1)
P 		113.4
(1)
P 		31.6
(-3)
M 		79.8
(-0.6)
P 		123
avr 118.6
(3) 		114.9
(2.7) 		73
(-1) 		92.2
(0.7) 		50.3
(-3) 		82.8
(-0.1) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 47.7
(3)
P 		28.7
(-0.8)
P 		17.8
(-3)
P 		30.6
(-0.4)
P 		30
B 48.6
(3)
P 		27.1
(-1.9)
P 		22.3
(-3)
P 		25.8
(-2.2)
P 		26
C 51.2
(3)
P 		22.5
(-2.8)
P 		21.6
(-3)
P 		28.2
(-1.7)
P 		30
avr 49.2
(3) 		26.1
(-1.8) 		20.6
(-3) 		28.2
(-1.4) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 20.7
(-2.7)
P 		46.4
(3)
P 		22.4
(-2.4)
P 		20.9
(-2.7)
P 		19.5
(-3)
M 		25.3
(-1.7)
P 		27
B 31.1
(2.4)
P 		32.9
(3)
P 		16.1
(-3)
P 		21.5
(-1.1)
P 		22.2
(-0.8)
P 		24.1
(-0.1)
P 		17
C 57.1
(3)
P 		35.1
(0.2)
P 		12.7
(-2.7)
P 		22.8
(-1.4)
P 		10.2
(-3)
M 		26.7
(-0.9)
P 		47
avr 36.3
(2.5) 		38.1
(3) 		17.1
(-3) 		21.7
(-1.7) 		17.3
(-2.9) 		25.4
(-0.6) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183627_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1403
Sequence Type Exemplar sequence
Representative Public ID T10E9.5 NCBI
Target Description T10E9.5 /REP_DB=WormBase Gene ID /WP=CE13551 /TR=O01599 /GB=AAB52468.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059477(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059477 NCBI Caenorhabditis elegans T10E9.5 (T10E9.5) mRNA, complete cds. 11/11 None
GENEFINDER00000043002 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6529443:6530335:-1 9/11 None
T10E9.5 ENSEMBL cdna:known chromosome:CEL140:I:6529749:6531441:-1 gene:T10E9.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042987 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6529677-6531370(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10E9.5
Entrez Gene 188383 Entrez gene
SwissProt O01599 EMBL-EBI
WormBase CE13551 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52468 Hypothetical protein T10E9.5 [Caenorhabditis elegans] ref|NP_491878.1| T10E9.5 [Caenorhabditis elegans] 1.0E-132
blast AAB52468 Hypothetical protein T10E9.5 [Caenorhabditis elegans] ref|NP_491878.1| T10E9.5 [Caenorhabditis elegans] 2.0E-66
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491878.1 5 13-32,47-68,81-103,130-147,154-173
T10E9.5 5 13-32,47-68,81-103,130-147,154-173
GENEFINDER00000043002 2 25-42,49-68
Sequence
Target Sequence 
>C. ELEGANS:183627_AT
aattcagctactactcggagtcattctgttgaagaaaaacgttcaaggttttgaggtaaa
tcttcgtcttgcaatttctctgaaatgtctatgttttgtgataataacatcattatcaat
aggtccattaatgattcataatatgtacttggatgcagtatctcctcaatgttccgatcg
tatcaatccatattttatgagcaacatgggttgtgctcttattcgatttttcactctgtt
gccaattattattatatgcgctctttttaacaaaccagaggattatgttccatgtttcac
cgctcttttgcctcttctatctgttaatataatggcatacgcattagaaagtccacccaa
aattcatttggtatcaaacaacgaacggaatgatgagaaaaaaaacaaccctaggcttct
ggtttatacgttcgaaaacgtttcaactgttgttcacgattttcggcaagccgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCAGCTACTACTCGGAGTCATT 200 177 186 Antisense
ATCTTCGTCTTGCAATTTCTCTGAA 364 31 245 Antisense
GTACTTGGATGCAGTATCTCCTCAA 136 461 330 Antisense
TCTCCTCAATGTTCCGATCGTATCA 468 609 346 Antisense
AACATGGGTTGTGCTCTTATTCGAT 164 137 388 Antisense
TATTCGATTTTTCACTCTGTTGCCA 159 665 405 Antisense
AGGATTATGTTCCATGTTTCACCGC 570 57 464 Antisense
TTTTGCCTCTTCTATCTGTTAATAT 458 677 491 Antisense
GGCATACGCATTAGAAAGTCCACCC 473 533 519 Antisense
CTAGGCTTCTGGTTTATACGTTCGA 72 225 596 Antisense
TGTTCACGATTTTCGGCAAGCCGTC 697 561 636 Antisense
Sequence Source Affymetrix Proprietary Database