[Home] | [Total List]

[183626_at]

Description C45E5.2 /REP_DB=WormBase Gene ID /WP=CE08730 /TR=Q18644 /GB=AAC24288.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 2
(-2.8)
A 		1.5
(-3)
A 		2.4
(-2.7)
A 		20.5
(3)
A 		19
B 4.1
(3)
A 		0.9
(-3)
A 		1.3
(-2.3)
A 		3.1
(1.1)
A 		3
C 9.1
(-0.4)
A 		16.5
(1.8)
A 		0.5
(-3)
A 		20.6
(3)
A 		20
avr 5.1
(-1.3) 		6.3
(-0.8) 		1.4
(-3) 		14.7
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 1.2
(-3)
A 		2.6
(-2.3)
A 		4.9
(-1.2)
A 		13.2
(3)
A 		2.5
(-2.4)
A 		5
(-1.1)
A 		12
B 9.4
(-1)
A 		2.6
(-3)
A 		22.8
(3)
A 		2.8
(-2.9)
A 		6.8
(-1.8)
A 		22.7
(3)
A 		20
C 3
(-1.4)
A 		2
(-2.2)
A 		0.9
(-3)
A 		1.1
(-2.9)
A 		1.7
(-2.4)
A 		9
(3)
A 		8
avr 4.5
(-1.7) 		2.4
(-3) 		9.5
(1.3) 		5.7
(-1) 		3.7
(-2.2) 		12.2
(3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.7
(-2.1)
A 		0.3
(-3)
A 		0.6
(-2.3)
A 		3
(3)
A 		3
B 1.3
(3)
A 		0.2
(-3)
A 		0.3
(-2.5)
A 		0.7
(-0.3)
A 		1
C 3
(0.7)
A 		4.7
(3)
A 		0.2
(-3)
A 		3.5
(1.4)
A 		5
avr 1.7
(0.9) 		1.7
(0.9) 		0.4
(-3) 		2.4
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.2
(-3)
A 		0.9
(-1.6)
A 		1.1
(-1.3)
A 		3.3
(3)
A 		0.8
(-1.8)
A 		1.2
(-1.1)
A 		3
B 3.3
(-1)
A 		0.9
(-2.8)
A 		5.5
(0.7)
A 		0.7
(-3)
A 		2.8
(-1.4)
A 		8.5
(3)
A 		8
C 1.1
(-1.1)
A 		0.6
(-2.1)
A 		0.2
(-3)
A 		0.2
(-3)
A 		0.5
(-2.4)
A 		3
(3)
A 		3
avr 1.5
(-1.8) 		0.8
(-3) 		2.3
(-0.4) 		1.4
(-1.9) 		1.4
(-1.9) 		4.2
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183626_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10800
Sequence Type Exemplar sequence
Representative Public ID C45E5.2 NCBI
Target Description C45E5.2 /REP_DB=WormBase Gene ID /WP=CE08730 /TR=Q18644 /GB=AAC24288.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068455(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068455 NCBI Caenorhabditis elegans C45E5.2 (C45E5.2) mRNA, complete cds. 11/11 None
GENEFINDER00000012960 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5740934:5746805:1 11/11 None
C45E5.2 ENSEMBL cdna:known chromosome:CEL140:IV:5741437:5743995:1 gene:C45E5.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012953 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5741442-5744001(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C45E5.2
Entrez Gene 183470 Entrez gene
SwissProt Q18644 EMBL-EBI
WormBase CE08730 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC24288 Hypothetical protein C45E5.2 [Caenorhabditis elegans] ref|NP_500856.1| C45E5.2 [Caenorhabditis elegans] 0.0
blast AAC24287 Hypothetical protein C45E5.1 [Caenorhabditis elegans] ref|NP_500857.2| C45E5.1 [Caenorhabditis elegans] 1.0E-177
blast CAE72659 Hypothetical protein CBG19872 [Caenorhabditis briggsae] 1.0E-121
blast AAC24286 Hypothetical protein C45E5.3 [Caenorhabditis elegans] ref|NP_500855.1| C45E5.3 [Caenorhabditis elegans] 2.0E-88
blast CAA93861 Hypothetical protein R09D1.1 [Caenorhabditis elegans] ref|NP_496021.1| R09D1.1 [Caenorhabditis elegans] 2.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 5.8E-108
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.2E-21
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 3.5E-15
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 3.7E-96
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 6.7E-21
Sequence
Target Sequence 
>C. ELEGANS:183626_AT
gtatgattgaagcagtttccggtcaattcggaaatcccagtgatgatcagtcacagtacg
aacatgtgtcggacaagcggatcattggattctacactgaagatgctacaactgaaatta
cagcttcagaactatccaaactaactcatgcagttttcggatttctttacttgaagacga
atggaacatttgacattttaaatgatcgtggaaaaggaagattcaagaatttaaatcgat
taataaaatatgaaaatctgaatgttaaaatgatgttttcaattggtggatgggctgact
cgacaaatttccgatcggttgtagcggacgtcaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATGATTGAAGCAGTTTCCGGTCA 142 455 1055 Antisense
CCGGTCAATTCGGAAATCCCAGTGA 62 263 1073 Antisense
GATGATCAGTCACAGTACGAACATG 370 411 1096 Antisense
CATGTGTCGGACAAGCGGATCATTG 57 211 1117 Antisense
GCGGATCATTGGATTCTACACTGAA 486 293 1131 Antisense
GAAATTACAGCTTCAGAACTATCCA 177 363 1168 Antisense
GAACTATCCAAACTAACTCATGCAG 708 349 1183 Antisense
ACTCATGCAGTTTTCGGATTTCTTT 138 101 1198 Antisense
GATGTTTTCAATTGGTGGATGGGCT 100 411 1326 Antisense
GATGGGCTGACTCGACAAATTTCCG 202 409 1343 Antisense
CGATCGGTTGTAGCGGACGTCAAAA 324 247 1366 Antisense
Sequence Source Affymetrix Proprietary Database