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[183625_at]

Description C50E3.3 /REP_DB=WormBase Gene ID /WP=CE08896 /TR=Q22932 /GB=AAB04887.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 42      4grp_total > 01      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 1.1
(-3)
A 		4.4
(-2.1)
A 		23.8
(3)
A 		6.4
(-1.6)
A 		23
B 3.6
(-2.4)
A 		1.8
(-3)
A 		12.7
(0.8)
A 		18.9
(3)
A 		17
C 28.3
(-1.2)
A 		13
(-2.4)
A 		4.6
(-3)
A 		84.5
(3)
P 		80
avr 11
(-2.1) 		6.4
(-3) 		13.7
(-1.5) 		36.6
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 33.9
(3)
A 		4.9
(-2.3)
A 		19.3
(0.3)
A 		20.7
(0.6)
A 		12.7
(-0.9)
A 		1
(-3)
A 		33
B 3.8
(-0.7)
A 		2.4
(-1.8)
A 		2.5
(-1.7)
A 		8.7
(3)
A 		0.8
(-3)
A 		1.7
(-2.3)
A 		8
C 3.8
(-3)
A 		25.6
(1.5)
A 		32.6
(3)
A 		3.8
(-3)
A 		8.5
(-2)
A 		3.7
(-3)
A 		29
avr 13.8
(1.4) 		11
(0.3) 		18.1
(3) 		11.1
(0.4) 		7.3
(-1.1) 		2.1
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 0.4
(-3)
A 		1
(-2.4)
A 		6.2
(3)
A 		0.9
(-2.5)
A 		6
B 1.2
(-1.7)
A 		0.4
(-3)
A 		2.9
(1.2)
A 		4
(3)
A 		4
C 9.4
(0.7)
A 		3.7
(-2)
A 		1.6
(-3)
A 		14.2
(3)
P 		13
avr 3.7
(-0.4) 		1.7
(-3) 		3.6
(-0.6) 		6.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 6.2
(3)
A 		1.7
(-1.5)
A 		4.2
(1)
A 		5.3
(2.1)
A 		3.8
(0.6)
A 		0.2
(-3)
A 		6
B 1.3
(0)
A 		0.8
(-1.5)
A 		0.6
(-2.1)
A 		2.3
(3)
A 		0.3
(-3)
A 		0.6
(-2.1)
A 		2
C 1.4
(-2.5)
A 		7.8
(2.6)
A 		8.3
(3)
A 		0.8
(-3)
A 		2.8
(-1.4)
A 		1.2
(-2.7)
A 		8
avr 3
(0.7) 		3.4
(1.4) 		4.4
(3) 		2.8
(0.4) 		2.3
(-0.4) 		0.7
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183625_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12167
Sequence Type Exemplar sequence
Representative Public ID C50E3.3 NCBI
Target Description C50E3.3 /REP_DB=WormBase Gene ID /WP=CE08896 /TR=Q22932 /GB=AAB04887.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072564(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072564 NCBI Caenorhabditis elegans C50E3.3 (C50E3.3) mRNA, complete cds. 11/11 None
GENEFINDER00000028560 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7607855:7609705:1 11/11 None
C50E3.3 ENSEMBL cdna:known chromosome:CEL140:V:7609231:7609705:1 gene:C50E3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7609231-7609706(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50E3.3
Entrez Gene 183655 Entrez gene
SwissProt Q22932 EMBL-EBI
WormBase CE08896 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504965 C50E3.3 [Caenorhabditis elegans] gb|AAB04887.1| Hypothetical protein C50E3.3 [Caenorhabditis elegans] 2.0E-72
blast NP_504965 C50E3.3 [Caenorhabditis elegans] gb|AAB04887.1| Hypothetical protein C50E3.3 [Caenorhabditis elegans] 3.0E-66
blast AAY86244 Hypothetical protein C50E3.14 [Caenorhabditis elegans] 2.0E-28
blast NP_504967 C50E3.1 [Caenorhabditis elegans] gb|AAB04889.1| Hypothetical protein C50E3.1 [Caenorhabditis elegans] 2.0E-20
blast NP_504967 C50E3.1 [Caenorhabditis elegans] gb|AAB04889.1| Hypothetical protein C50E3.1 [Caenorhabditis elegans] 8.0E-20
blast CAE61506 Hypothetical protein CBG05405 [Caenorhabditis briggsae] 5.0E-17
Sequence
Target Sequence 
>C. ELEGANS:183625_AT
acaacgtcagtaaatcggagcagtggggagtttggtttgatggaacaagaaaaacgaagt
gtggacctagtgagttaactcaatgcaattcactgaagggatttaaatttaatgataaaa
cattagtttctaaatcaggatacctatttagcgaaggcgaaccaaacaataaaaacggaa
cccagaaatgcatcgttttaaggattggcaatgtttccactgcacacaatcatggaacgc
ttgatgacgtaccgtgctcactatcagcagaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAACGTCAGTAAATCGGAGCAGTG 35 113 59 Antisense
GCAGTGGGGAGTTTGGTTTGATGGA 543 311 78 Antisense
GTGTGGACCTAGTGAGTTAACTCAA 134 489 117 Antisense
GAGTTAACTCAATGCAATTCACTGA 445 397 130 Antisense
GATACCTATTTAGCGAAGGCGAACC 448 415 197 Antisense
ACGGAACCCAGAAATGCATCGTTTT 376 95 233 Antisense
AATGCATCGTTTTAAGGATTGGCAA 467 165 245 Antisense
GATTGGCAATGTTTCCACTGCACAC 592 435 261 Antisense
CACTGCACACAATCATGGAACGCTT 158 199 276 Antisense
GAACGCTTGATGACGTACCGTGCTC 265 347 293 Antisense
GTACCGTGCTCACTATCAGCAGAAG 32 459 307 Antisense
Sequence Source Affymetrix Proprietary Database