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[183624_at]

Description F55G11.5 /REP_DB=WormBase Gene ID /WP=CE18751 /TR=Q9XUE0 /GB=CAB05216.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 07      4grp_high_8_8 > 59      6grp_total > 08      4grp_total > 60      6grp_cgc > 10      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 464
1 2 3 4 range
A 330.8
(1.7)
P 		286.4
(0.9)
P 		404.6
(3)
P 		66.5
(-3)
A 		338
B 277.2
(1)
P 		181.7
(-0.5)
P 		405.8
(3)
P 		24.6
(-3)
A 		381
C 296.5
(0.4)
P 		234.6
(-0.4)
P 		488.6
(3)
P 		45.7
(-3)
P 		443
avr 301.5
(1) 		234.2
(-0.1) 		433
(3) 		45.6
(-3) 		387

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 171.5
(3)
P 		72.4
(-1.2)
P 		85.7
(-0.6)
P 		99.1
(-0.1)
P 		54.2
(-1.9)
P 		29.1
(-3)
A 		142
B 197.3
(3)
P 		142
(0.8)
P 		47.3
(-3)
M 		115.5
(-0.3)
P 		77.8
(-1.8)
P 		48.2
(-3)
P 		150
C 213.5
(3)
P 		111.5
(-0.5)
P 		78.5
(-1.7)
P 		135.3
(0.3)
P 		39.9
(-3)
A 		47.9
(-2.7)
P 		174
avr 194.1
(3) 		108.6
(-0.4) 		70.5
(-1.9) 		116.6
(-0.1) 		57.3
(-2.4) 		41.7
(-3) 		152
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 120.5
(3)
P 		62.2
(-0.2)
P 		105.8
(2.2)
P 		9.7
(-3)
A 		111
B 88.4
(2.6)
P 		44.9
(-0.3)
P 		94
(3)
P 		5.2
(-3)
A 		89
C 98.2
(0.3)
P 		67.4
(-0.8)
P 		170.3
(3)
P 		7.7
(-3)
P 		163
avr 102.4
(1.9) 		58.2
(-0.4) 		123.4
(3) 		7.5
(-3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 31.6
(3)
P 		25.8
(1.6)
P 		18.7
(-0.2)
P 		25.1
(1.4)
P 		16.3
(-0.7)
P 		7.1
(-3)
A 		25
B 68.7
(3)
P 		47.3
(0.8)
P 		11.5
(-3)
M 		30.6
(-1)
P 		31.6
(-0.9)
P 		18
(-2.3)
P 		57
C 79.1
(3)
P 		34
(-1.1)
P 		20
(-2.4)
P 		27.2
(-1.7)
P 		12.9
(-3)
A 		16
(-2.7)
P 		66
avr 59.8
(3) 		35.7
(-0.1) 		16.7
(-2.6) 		27.6
(-1.2) 		20.3
(-2.1) 		13.7
(-3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183624_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10211
Sequence Type Exemplar sequence
Representative Public ID F55G11.5 NCBI
Target Description F55G11.5 /REP_DB=WormBase Gene ID /WP=CE18751 /TR=Q9XUE0 /GB=CAB05216.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070081(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070081 NCBI Caenorhabditis elegans Downstream Of DAF-16 (regulated by DAF-16) family member (dod-22) (dod-22) mRNA, complete cds. 11/11 None
SNAP00000016143 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12965421:12967213:1 11/11 None
GENEFINDER00000016155 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12958000:12967213:1 11/11 None
F55G11.5 ENSEMBL cdna:known chromosome:CEL140:IV:12965406:12967288:1 gene:F55G11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12965426-12967219(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol dod-22
Ensembl F55G11.5
Entrez Gene 178247 Entrez gene
SwissProt Q9XUE0 EMBL-EBI
WormBase CE18751 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05216 Hypothetical protein F55G11.5 [Caenorhabditis elegans] ref|NP_502482.1| Downstream Of DAF-16 (regulated by DAF-16) family member (dod-22) [Caenorhabditis elegans] 0.0
blast CAB05221 Hypothetical protein F55G11.7 [Caenorhabditis elegans] ref|NP_502480.1| F55G11.7 [Caenorhabditis elegans] 0.0
blast CAB05220 Hypothetical protein F55G11.8 [Caenorhabditis elegans] ref|NP_502481.1| F55G11.8 [Caenorhabditis elegans] 0.0
blast CAB03526 Hypothetical protein K10D11.2 [Caenorhabditis elegans] ref|NP_502487.1| K10D11.2 [Caenorhabditis elegans] 1.0E-136
blast CAB05139 Hypothetical protein C32H11.13 [Caenorhabditis elegans] ref|NP_502475.1| C32H11.13 [Caenorhabditis elegans] 1.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 4.5E-50
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.6E-48
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 9.7E-48
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.0E-50
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 4.5E-50
Sequence
Target Sequence 
>C. ELEGANS:183624_AT
gatattggctactctggtgttactgaagcagccgaagttcttaacgctactggaataatt
tacaaacaatcaatttatagtagaggtggaatacatttgcttccatttccacaggatccg
accaattacttttcgttgagaagtgctcttgtatttgaaggaggtagtttcccggggtgc
aattatgtgggaaatctttaccaaatgtaccggtcgaaaaagccgtattcattctcaagt
gaaggatcaattgttgtttttaatcttgctgccagcggtaatagtgacaagctcttgatc
caggatacagaatacgtacaagacattgctcaatttgtcgagctgtacccagaaattaaa
acttcttacaccgaaactatcaacggcggaaaactgaagtcatctctggtttctgtttca
ggtgctaatttcaagctgaccaaagttaaaatggatgacgaagcaactatggcagtttac
tatggctctccaacggtagggactat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATTGGCTACTCTGGTGTTACTG 50 427 415 Antisense
GCAGCCGAAGTTCTTAACGCTACTG 72 315 442 Antisense
CATTTGCTTCCATTTCCACAGGATC 302 215 508 Antisense
CACAGGATCCGACCAATTACTTTTC 548 193 524 Antisense
AGTTTCCCGGGGTGCAATTATGTGG 701 59 580 Antisense
AAAAAGCCGTATTCATTCTCAAGTG 643 129 631 Antisense
TGTTGTTTTTAATCTTGCTGCCAGC 84 563 666 Antisense
TCAATTTGTCGAGCTGTACCCAGAA 12 635 744 Antisense
GAAGTCATCTCTGGTTTCTGTTTCA 269 337 810 Antisense
CTATGGCAGTTTACTATGGCTCTCC 363 225 881 Antisense
ATGGCTCTCCAACGGTAGGGACTAT 384 53 896 Antisense
Sequence Source Affymetrix Proprietary Database