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[183623_at]

Description C16E9.6 /REP_DB=WormBase Gene ID /WP=CE04020 /TR=Q18051 /GB=AAC47960.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 6.9
(-2.9)
A 		48.7
(3)
M 		6.3
(-3)
A 		9.5
(-2.5)
A 		42
B 4.9
(-3)
A 		12.5
(3)
A 		6.5
(-1.7)
A 		7.3
(-1.1)
A 		8
C 17
(-1.7)
A 		9.7
(-2.8)
A 		8.5
(-3)
A 		48.8
(3)
A 		40
avr 9.6
(-2.1) 		23.6
(3) 		7.1
(-3) 		21.9
(2.4) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 7.9
(-2.4)
A 		8.9
(-2)
A 		10.9
(-1.1)
A 		6.6
(-3)
A 		14.6
(0.6)
A 		20.1
(3)
A 		14
B 34.2
(2.9)
A 		24.7
(0.8)
A 		34.6
(3)
A 		12.2
(-2.1)
A 		24.9
(0.8)
A 		8
(-3)
A 		27
C 5.7
(-3)
A 		9.5
(-2.3)
A 		37.2
(3)
A 		36.6
(2.9)
A 		8
(-2.6)
A 		8.1
(-2.5)
A 		32
avr 15.9
(-1.5) 		14.4
(-2.1) 		27.6
(3) 		18.5
(-0.5) 		15.8
(-1.6) 		12.1
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.5
(-2.3)
A 		10.6
(3)
M 		1.6
(-2.9)
A 		1.4
(-3)
A 		9
B 1.6
(-2.6)
A 		3.1
(3)
A 		1.5
(-3)
A 		1.6
(-2.6)
A 		2
C 5.6
(0.1)
A 		2.8
(-3)
A 		3
(-2.8)
A 		8.2
(3)
A 		5
avr 3.2
(-0.9) 		5.5
(3) 		2
(-3) 		3.7
(-0.1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.4
(-3)
A 		3.2
(0.1)
A 		2.4
(-1.3)
A 		1.7
(-2.5)
A 		4.4
(2.1)
A 		4.9
(3)
A 		4
B 11.9
(3)
A 		8.2
(0.5)
A 		8.4
(0.6)
A 		3.2
(-2.9)
A 		10.1
(1.8)
A 		3
(-3)
A 		9
C 2.1
(-3)
A 		2.9
(-2.4)
A 		9.5
(3)
A 		7.4
(1.3)
A 		2.6
(-2.6)
A 		2.7
(-2.5)
A 		7
avr 5.1
(-0.1) 		4.8
(-0.6) 		6.8
(3) 		4.1
(-1.9) 		5.7
(1) 		3.5
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183623_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16577
Sequence Type Exemplar sequence
Representative Public ID C16E9.6 NCBI
Target Description C16E9.6 /REP_DB=WormBase Gene ID /WP=CE04020 /TR=Q18051 /GB=AAC47960.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C16E9.6
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C16E9.6 C16E9.6 /REP_DB=WormBase Gene ID /WP=CE04020 /TR=Q18051 /GB=AAC47960.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6953427-6953769(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:183623_AT
gagaccgcgttaagtgtaatgccacctcctatatcaaggaggatcgcaagagccatggta
agatgttcaactttttcccccacttcactcctctaactcaatcctatccttgtgcaagca
agtgcctctttttctggggggctcaatctgtatacagctccttagcgtcgacaccattct
cgcctaaccaacttgtcaattcacccttaattacaagtttcacatccccccaccactctt
cttccttttctcactgtttccccttgagcgcgtcgaggggggccctgttgtgtggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGACCGCGTTAAGTGTAATGCCAC 593 393 23 Antisense
GTAATGCCACCTCCTATATCAAGGA 237 461 38 Antisense
GGAGGATCGCAAGAGCCATGGTAAG 120 515 60 Antisense
GTGCAAGCAAGTGCCTCTTTTTCTG 135 481 134 Antisense
TTTCTGGGGGGCTCAATCTGTATAC 233 669 153 Antisense
TGTATACAGCTCCTTAGCGTCGACA 575 559 171 Antisense
TTCTCGCCTAACCAACTTGTCAATT 534 693 199 Antisense
ACCAACTTGTCAATTCACCCTTAAT 447 85 209 Antisense
CACCCTTAATTACAAGTTTCACATC 188 195 224 Antisense
TTTCCCCTTGAGCGCGTCGAGGGGG 644 1 279 Antisense
TCGAGGGGGGCCCTGTTGTGTGGAA 532 597 295 Antisense
Sequence Source Affymetrix Proprietary Database