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[183622_s_at]

Description T26A5.2 /REP_DB=WormBase Gene ID /WP=CE00703 /TR=Q22801 /GB=AAC77505.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 45.1
(-0.7)
A 		13.3
(-3)
A 		31.4
(-1.7)
A 		95.6
(3)
A 		82
B 37
(-0)
A 		9.5
(-3)
A 		65.1
(3)
A 		39
(0.2)
A 		56
C 8.9
(-3)
A 		28.5
(-1.7)
A 		43.5
(-0.7)
A 		100.9
(3)
A 		92
avr 30.3
(-1.7) 		17.1
(-3) 		46.7
(-0.1) 		78.5
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 298
1 2 3 4 5 6 range
A 27.8
(-3)
A 		63.6
(-2.2)
A 		54.8
(-2.4)
A 		119.2
(-1)
A 		201.9
(0.9)
P 		296.8
(3)
P 		269
B 50.7
(-2.7)
A 		35
(-3)
A 		100.1
(-1.6)
A 		115.1
(-1.3)
A 		201
(0.6)
P 		314.3
(3)
P 		279
C 34.3
(-3)
A 		79.6
(-2.1)
A 		41.7
(-2.8)
A 		87.4
(-1.9)
A 		155.9
(-0.5)
P 		325.7
(3)
P 		291
avr 37.6
(-3) 		59.4
(-2.5) 		65.5
(-2.4) 		107.2
(-1.5) 		186.3
(0.2) 		312.3
(3) 		275
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 16.4
(3)
A 		2.9
(-3)
A 		8.2
(-0.6)
A 		14
(1.9)
A 		14
B 11.8
(1.5)
A 		2.3
(-3)
A 		15.1
(3)
A 		8.3
(-0.2)
A 		13
C 3
(-3)
A 		8.2
(-0.8)
A 		15.2
(2.2)
A 		17
(3)
A 		14
avr 10.4
(1.1) 		4.5
(-3) 		12.8
(2.8) 		13.1
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 5.1
(-3)
A 		22.6
(-1.4)
A 		11.9
(-2.4)
A 		30.2
(-0.8)
A 		60.9
(2)
P 		72.3
(3)
P 		67
B 17.6
(-2.7)
A 		11.6
(-3)
A 		24.3
(-2.3)
A 		30.5
(-1.9)
A 		81.6
(1)
P 		117.2
(3)
P 		106
C 12.7
(-2.9)
A 		24.3
(-2.2)
A 		10.6
(-3)
A 		17.6
(-2.6)
A 		50.4
(-0.6)
P 		109
(3)
P 		98
avr 11.8
(-3) 		19.5
(-2.5) 		15.6
(-2.7) 		26.1
(-2) 		64.3
(0.6) 		99.5
(3) 		88
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183622_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6706
Sequence Type Exemplar sequence
Representative Public ID T26A5.2 NCBI
Target Description T26A5.2 /REP_DB=WormBase Gene ID /WP=CE00703 /TR=Q22801 /GB=AAC77505.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066023(11), NM_181965(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066023 NCBI Caenorhabditis elegans T26A5.2a (T26A5.2) mRNA, complete cds. 11/11 None
NM_181965 NCBI Caenorhabditis elegans T26A5.2b (T26A5.2) mRNA, complete cds. 11/11 None
SNAP00000033275 ENSEMBL cdna:SNAP chromosome:CEL140:III:6467274:6471227:1 11/11 None
GENEFINDER00000033288 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6467274:6471269:1 11/11 None
T26A5.2a ENSEMBL cdna:known chromosome:CEL140:III:6467319:6471564:1 gene:T26A5.2 11/11 None
T26A5.2b ENSEMBL cdna:known chromosome:CEL140:III:6468405:6471227:1 gene:T26A5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6467317-6471226(+) 99.66 100.0
Public Domain and Genome References
Ensembl T26A5.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498424 T26A5.2a [Caenorhabditis elegans] gb|AAC77505.1| Hypothetical protein T26A5.2a [Caenorhabditis elegans] 0.0
blast NP_871694 T26A5.2b [Caenorhabditis elegans] gb|AAN65290.1| Hypothetical protein T26A5.2b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:183622_S_AT
gaatcaacgcagaggccgtgtgtaatacctagaacatttgaaacttcaaattccaaagat
gcttcaaacaaggttccattgcagtcggttagcgagccgaagattttgttgcaggataca
aactcacgttgtgctcaaccacgaaaagctgtttctcatgaagggctgaaatcgcatcag
caagagaatgttctgaaacatctcgacaataagcacaagtttctgtgttttgtgaatatt
gccaagcgaattgaaaacgataatggtaatccattggttgagctgtctatcggattcgat
gaaaacggtggaaaagtgcaacaatctccatggcccctcggtattcgaatgttattgact
gatggtttggagaaaacggaagtcaagattcaaggagatgtccaggatacgaatggggag
acagttactttcatgattcaacaacaactttccgatctggactttctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCAACGCAGAGGCCGTGTGTAA 422 327 1822 Antisense
GATGCTTCAAACAAGGTTCCATTGC 627 413 1879 Antisense
GTTCCATTGCAGTCGGTTAGCGAGC 362 441 1894 Antisense
CGAGCCGAAGATTTTGTTGCAGGAT 241 247 1914 Antisense
GATACAAACTCACGTTGTGCTCAAC 624 423 1936 Antisense
GTGCTCAACCACGAAAAGCTGTTTC 488 479 1952 Antisense
GTAATCCATTGGTTGAGCTGTCTAT 150 463 2087 Antisense
GTTGAGCTGTCTATCGGATTCGATG 231 439 2098 Antisense
TGGCCCCTCGGTATTCGAATGTTAT 74 503 2152 Antisense
GGGGAGACAGTTACTTTCATGATTC 297 499 2236 Antisense
ACAACTTTCCGATCTGGACTTTCTG 101 113 2265 Antisense
Sequence Source Affymetrix Proprietary Database