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[183621_at]

Description F31F7.1 /REP_DB=WormBase Gene ID /WP=CE09839 /TR=O01546 /GB=AAB52323.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 71      4grp_highest_8_8 > 50      4grp_high_8_8 > 32      6grp_highest_nonorm > 35      6grp_total > 81      4grp_total > 47      6grp_highest_sub > 04_05      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6251
1 2 3 4 range
A 6813.3
(3)
P 		1515.4
(-2.6)
P 		1180
(-2.9)
P 		1092.4
(-3)
P 		5721
B 7061.4
(3)
P 		1408.4
(-2.4)
P 		1099.2
(-2.7)
P 		810.3
(-3)
P 		6251
C 6866.5
(3)
P 		1290
(-2.7)
P 		1070.1
(-2.9)
P 		969.2
(-3)
P 		5897
avr 6913.7
(3) 		1404.6
(-2.5) 		1116.4
(-2.8) 		957.3
(-3) 		5956

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3466
1 2 3 4 5 6 range
A 2782.4
(-0.2)
P 		2781.2
(-0.2)
P 		2663.7
(-0.4)
P 		4509.7
(3)
P 		3932.7
(1.9)
P 		1222.9
(-3)
P 		3287
B 2225.1
(-0.8)
P 		2542.8
(-0.1)
P 		2658.3
(0.1)
P 		4197.8
(3)
P 		3344.7
(1.4)
P 		1044.2
(-3)
P 		3154
C 2449.8
(-0.2)
P 		2671.2
(0.2)
P 		4027.4
(3)
P 		3313.5
(1.5)
P 		3203.7
(1.3)
P 		1095
(-3)
P 		2932
avr 2485.8
(-0.2) 		2665.1
(0.2) 		3116.5
(1.1) 		4007
(3) 		3493.7
(1.9) 		1120.7
(-3) 		2886
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2321
1 2 3 4 range
A 2480.7
(3)
P 		328.9
(-2.6)
P 		308.5
(-2.6)
P 		159.9
(-3)
P 		2321
B 2251.8
(3)
P 		347.8
(-2.5)
P 		254.7
(-2.8)
P 		172.7
(-3)
P 		2079
C 2273
(3)
P 		370.9
(-2.4)
P 		373
(-2.4)
P 		163.4
(-3)
P 		2110
avr 2335.2
(3) 		349.2
(-2.5) 		312.1
(-2.6) 		165.3
(-3) 		2170

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1061
1 2 3 4 5 6 range
A 512.9
(-1.5)
P 		989.1
(1.7)
P 		580.1
(-1.1)
P 		1143.8
(2.7)
P 		1186.7
(3)
P 		297.7
(-3)
P 		889
B 774.2
(-0.6)
P 		846.4
(-0.2)
P 		645.5
(-1.4)
P 		1111.8
(1.5)
P 		1358.9
(3)
P 		389.4
(-3)
P 		970
C 908
(1.8)
P 		815.1
(1)
P 		1025
(2.9)
P 		666.3
(-0.3)
P 		1036.7
(3)
P 		366.6
(-3)
P 		670
avr 731.7
(-0.3) 		883.5
(0.8) 		750.2
(-0.2) 		974
(1.4) 		1194.1
(3) 		351.2
(-3) 		843
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183621_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12052
Sequence Type Exemplar sequence
Representative Public ID F31F7.1 NCBI
Target Description F31F7.1 /REP_DB=WormBase Gene ID /WP=CE09839 /TR=O01546 /GB=AAB52323.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072202(11), NM_182376(10), NM_182375(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072202 NCBI Caenorhabditis elegans F31F7.1a (F31F7.1) mRNA, complete cds. 11/11 None
NM_182376 NCBI Caenorhabditis elegans F31F7.1c (F31F7.1) mRNA, complete cds. 10/11 None
NM_182375 NCBI Caenorhabditis elegans F31F7.1b (F31F7.1) mRNA, complete cds. 11/11 None
F31F7.1a ENSEMBL cdna:known chromosome:CEL140:V:6279034:6280734:1 gene:F31F7.1 11/11 None
F31F7.1b.2 ENSEMBL cdna:known chromosome:CEL140:V:6279492:6280650:1 gene:F31F7.1 11/11 None
F31F7.1c ENSEMBL cdna:known chromosome:CEL140:V:6279492:6280653:1 gene:F31F7.1 10/11 None
F31F7.1b.1 ENSEMBL cdna:known chromosome:CEL140:V:6279492:6280614:1 gene:F31F7.1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011407 7/11 Cross Hyb Matching Probes None
GENEFINDER00000011425 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6279491-6280601(+) 99.37 99.37
Public Domain and Genome References
Ensembl F31F7.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAQ65201 Hypothetical protein F31F7.1a [Caenorhabditis elegans] ref|NP_504603.2| F31F7.1a [Caenorhabditis elegans] 0.0
blast CAE71856 Hypothetical protein CBG18900 [Caenorhabditis briggsae] 1.0E-169
blast AAQ65202 Hypothetical protein F31F7.1c [Caenorhabditis elegans] ref|NP_872176.2| F31F7.1c [Caenorhabditis elegans] 1.0E-160
blast AAQ65201 Hypothetical protein F31F7.1a [Caenorhabditis elegans] ref|NP_504603.2| F31F7.1a [Caenorhabditis elegans] 1.0E-160
blast AAQ65202 Hypothetical protein F31F7.1c [Caenorhabditis elegans] ref|NP_872176.2| F31F7.1c [Caenorhabditis elegans] 1.0E-159
Sequence
Target Sequence 
>C. ELEGANS:183621_AT
ttggagctgtcaaaatgtcccctctatacgctacacgctttaactttgctttaatgaacg
aattctggcacatgtttgccgatatcgatgttgttgatctcgtgattccggctatgccaa
acgggtttacttgcaagaaaattgaagacaacgactgggagaaacttcacgagtatgacg
aaactatttgcgatctcgatctcgatcgtagaaagtttatgaaaatgaatttaagcgttg
ctggaacgattgcacgcattgttttcaatgaatcaggaaaaatcgttggatttggagcca
ttaaaatggcaactggaaatgagctcatcatgtccccattgtatgctgaaacacttgatg
ccgctactgctctgatgtcaactctcctgaaaggaatccctgcgatcctttcgttttcta
gtctaattacgatctacccagacgtcaataacgacgtgccacgcttgttatcgttaataa
gtaataataattatgagacacatcaagcatatcgtcatcagttcaccgaggaaatgatgg
acttcccacagcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGAGCTGTCAAAATGTCCCCTCT 242 707 374 Antisense
TACGCTACACGCTTTAACTTTGCTT 28 649 400 Antisense
ATGTTGTTGATCTCGTGATTCCGGC 437 47 461 Antisense
GATTCCGGCTATGCCAAACGGGTTT 649 411 477 Antisense
TCATCATGTCCCCATTGTATGCTGA 122 621 698 Antisense
TGAAACACTTGATGCCGCTACTGCT 536 571 720 Antisense
TGCGATCCTTTCGTTTTCTAGTCTA 606 583 774 Antisense
AATTACGATCTACCCAGACGTCAAT 414 175 798 Antisense
AACGACGTGCCACGCTTGTTATCGT 361 143 823 Antisense
CAAGCATATCGTCATCAGTTCACCG 420 185 877 Antisense
GAAATGATGGACTTCCCACAGCACA 10 363 904 Antisense
Sequence Source Affymetrix Proprietary Database