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[183620_at]

Description W06B4.1 /REP_DB=WormBase Gene ID /WP=CE02890 /TR=Q23196 /GB=AAC46817.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 17      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 45.7
(-3)
A 		82.4
(-0)
A 		58.3
(-2)
A 		120.1
(3)
A 		74
B 57.6
(-3)
A 		74.9
(-0.7)
A 		67.6
(-1.7)
A 		102.7
(3)
A 		45
C 22.1
(-3)
A 		78.3
(-0.9)
A 		102.6
(0.1)
A 		179.8
(3)
A 		158
avr 41.8
(-3) 		78.5
(-0.6) 		76.2
(-0.8) 		134.2
(3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 816
1 2 3 4 5 6 range
A 105.6
(-2.5)
A 		46.2
(-3)
A 		45
(-3)
A 		107
(-2.5)
A 		564.9
(1.3)
P 		763.9
(3)
P 		719
B 43.7
(-2.9)
A 		25.1
(-3)
A 		90.1
(-2.5)
A 		122.1
(-2.3)
A 		652.4
(1.6)
P 		840
(3)
P 		815
C 23.9
(-3)
A 		58.2
(-2.7)
A 		32.9
(-2.9)
A 		86.6
(-2.5)
A 		628.9
(1.6)
P 		808.6
(3)
P 		785
avr 57.7
(-2.9) 		43.2
(-3) 		56
(-2.9) 		105.2
(-2.5) 		615.4
(1.5) 		804.2
(3) 		761
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 16.6
(0)
A 		17.9
(3)
A 		15.3
(-3)
A 		17.6
(2.3)
A 		3
B 18.4
(-0.4)
A 		18.5
(-0.3)
A 		15.7
(-3)
A 		21.9
(3)
A 		6
C 7.3
(-3)
A 		22.5
(0.2)
A 		35.7
(3)
A 		30.3
(1.9)
A 		28
avr 14.1
(-3) 		19.6
(0.6) 		22.2
(2.3) 		23.3
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 305
1 2 3 4 5 6 range
A 19.5
(-2.7)
A 		16.4
(-2.8)
A 		9.8
(-3)
A 		27.1
(-2.4)
A 		170.5
(2.5)
P 		186
(3)
P 		176
B 15.2
(-2.9)
A 		8.4
(-3)
A 		21.9
(-2.7)
A 		32.3
(-2.5)
A 		265.1
(2.1)
P 		313.2
(3)
P 		305
C 8.9
(-3)
A 		17.8
(-2.8)
A 		8.4
(-3)
A 		17.4
(-2.8)
A 		203.5
(1.5)
P 		270.7
(3)
P 		262
avr 14.5
(-3) 		14.2
(-3) 		13.4
(-3) 		25.6
(-2.7) 		213
(1.9) 		256.6
(3) 		243
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183620_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5439
Sequence Type Exemplar sequence
Representative Public ID W06B4.1 NCBI
Target Description W06B4.1 /REP_DB=WormBase Gene ID /WP=CE02890 /TR=Q23196 /GB=AAC46817.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062389(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062389 NCBI Caenorhabditis elegans W06B4.1 (W06B4.1) mRNA, complete cds. 11/11 None
SNAP00000008474 ENSEMBL cdna:SNAP chromosome:CEL140:II:4471653:4473323:1 11/11 None
W06B4.1 ENSEMBL cdna:known chromosome:CEL140:II:4471391:4473521:1 gene:W06B4.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000008481 3/11 Cross Hyb Matching Probes None
GENEFINDER00000008483 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4471389-4473322(+) 95.07 100.0
Public Domain and Genome References
Gene Title
Ensembl W06B4.1
Entrez Gene 173785 Entrez gene
SwissProt Q23196 EMBL-EBI
WormBase CE02890 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46817 Hypothetical protein W06B4.1 [Caenorhabditis elegans] ref|NP_494790.1| W06B4.1 [Caenorhabditis elegans] 0.0
blast CAE67888 Hypothetical protein CBG13484 [Caenorhabditis briggsae] 1.0E-31
Sequence
Target Sequence 
>C. ELEGANS:183620_AT
gtggacgtacatccttccagatgtttgtcaatgacgttgagcgtggcacggagaacatga
tgagccgaggcaacaagagcagtgtgacggacaaaataaaagacgtgttcaagacggtat
tttcaatgaagaatgaccgagacctgcttcaaatgaatgaaatatgcttctccaattatt
ataagcatcgtctggcgctgttcaccgaaaagttggccagacataatatgattggcgacg
tggacactacaaaacaggaagagggagaagaggaagagcaaaatgagcaagtggaagagt
atgaacagctccctgtaatcgccgaagtcttccacaacgccggaatcacactcggaaatc
tcgttgtaaacgtcttgcgtcaatatccccccactgagaaagagaaaacactgaaaattc
tgctcttcggacgaatgttcgattcttataaaaatctgatgagcggcttcctcgactcga
tctctgatacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGACGTACATCCTTCCAGATGTT 41 491 686 Antisense
GAATGACCGAGACCTGCTTCAAATG 710 329 816 Antisense
TATAAGCATCGTCTGGCGCTGTTCA 287 659 865 Antisense
GTATGAACAGCTCCCTGTAATCGCC 448 453 984 Antisense
GTAATCGCCGAAGTCTTCCACAACG 134 463 1000 Antisense
TCCACAACGCCGGAATCACACTCGG 273 587 1016 Antisense
TAAACGTCTTGCGTCAATATCCCCC 652 639 1052 Antisense
CAATATCCCCCCACTGAGAAAGAGA 147 179 1066 Antisense
ACTGAAAATTCTGCTCTTCGGACGA 579 95 1095 Antisense
AAAATCTGATGAGCGGCTTCCTCGA 504 133 1136 Antisense
TTCCTCGACTCGATCTCTGATACAG 107 701 1153 Antisense
Sequence Source Affymetrix Proprietary Database