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[183619_at]

Description C15C7.6 /REP_DB=WormBase Gene ID /WP=CE03992 /TR=Q18015 /GB=AAK39169.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 51      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 13.3
(-2.7)
A 		24.2
(1.4)
A 		28.5
(3)
A 		12.5
(-3)
A 		16
B 10.8
(-3)
A 		20.1
(0.4)
A 		27
(3)
A 		11.3
(-2.8)
A 		16
C 39
(0.9)
A 		56.7
(3)
A 		29.6
(-0.2)
A 		5.2
(-3)
A 		52
avr 21
(-0.2) 		33.7
(3) 		28.4
(1.7) 		9.7
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 52.5
(3)
A 		20.7
(-0.9)
A 		41.7
(1.7)
A 		3.1
(-3)
A 		47.2
(2.4)
A 		25.8
(-0.2)
A 		49
B 47
(3)
A 		18.6
(-2.7)
A 		36.8
(0.9)
A 		24.9
(-1.5)
A 		25.1
(-1.4)
A 		17.3
(-3)
A 		30
C 23.7
(-2)
A 		52.2
(0.8)
A 		13.4
(-3)
A 		75
(3)
A 		26.1
(-1.8)
A 		33.3
(-1.1)
A 		62
avr 41.1
(3) 		30.5
(-1.1) 		30.6
(-1) 		34.3
(0.4) 		32.8
(-0.2) 		25.5
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 4.9
(0.3)
A 		5.2
(0.6)
A 		7.5
(3)
A 		1.8
(-3)
A 		6
B 3.4
(-1.5)
A 		5
(1)
A 		6.3
(3)
A 		2.4
(-3)
A 		4
C 12.9
(1.7)
A 		16.3
(3)
A 		10.3
(0.7)
A 		0.9
(-3)
A 		15
avr 7.1
(1.6) 		8.8
(3) 		8
(2.3) 		1.7
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 9.7
(1)
A 		7.4
(-0)
A 		9.1
(0.7)
A 		0.8
(-3)
A 		14.2
(3)
A 		6.3
(-0.5)
A 		13
B 16.3
(3)
A 		6.2
(-3)
A 		8.9
(-1.4)
A 		6.6
(-2.8)
A 		10.2
(-0.6)
A 		6.5
(-2.8)
A 		10
C 8.8
(-0.4)
A 		15.9
(3)
A 		3.4
(-3)
A 		15.1
(2.6)
A 		8.4
(-0.6)
A 		11.1
(0.7)
A 		13
avr 11.6
(3) 		9.8
(0.6) 		7.1
(-3) 		7.5
(-2.5) 		10.9
(2.1) 		8
(-1.8) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183619_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18179
Sequence Type Exemplar sequence
Representative Public ID C15C7.6 NCBI
Target Description C15C7.6 /REP_DB=WormBase Gene ID /WP=CE03992 /TR=Q18015 /GB=AAK39169.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076144(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076144 NCBI Caenorhabditis elegans C15C7.6 (C15C7.6) mRNA, complete cds. 11/11 None
GENEFINDER00000025251 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3167562:3169711:-1 11/11 None
SNAP00000025249 ENSEMBL cdna:SNAP chromosome:CEL140:X:3167607:3169711:-1 11/11 None
C15C7.6 ENSEMBL cdna:known chromosome:CEL140:X:3167561:3170499:-1 gene:C15C7.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3167607-3169712(-) 98.98 100.0
Public Domain and Genome References
Gene Title
Ensembl C15C7.6
Entrez Gene 182634 Entrez gene
SwissProt Q18015 EMBL-EBI
WormBase CE37092 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39169 Hypothetical protein C15C7.6 [Caenorhabditis elegans] ref|NP_508545.2| C15C7.6 [Caenorhabditis elegans] 0.0
blast CAE68389 Hypothetical protein CBG14148 [Caenorhabditis briggsae] 2.0E-50
blast CAE68389 Hypothetical protein CBG14148 [Caenorhabditis briggsae] 4.0E-33
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508545.2 2 7-24,378-400
C15C7.6 2 7-24,378-400
GENEFINDER00000025251 2 307-329,341-363
SNAP00000025249 1 307-329
Sequence
Target Sequence 
>C. ELEGANS:183619_AT
ggaatactacttgcacggttaccagccccgaaaattgtccggtcgaggttgtgatggctc
ctactaaagtttttgttagagaatatgttggtgattatagtgttgtcgcagcagtcgcag
aagcttatcaaacaatgattcatggacattattcaactcatcaaatgggcatctcgcagc
acgtttctttattgctcccaattggttcgtatgcaaaattcaataacgtcaaagtttttg
gaaaatcacttaatgcgttcgatcattttgcagttaacacagaggcggaccacctcccag
tgagccatgaagatctcgataaactggaagccaattatggaaacactgaagaggtcctca
ggcatcgtgcacttctcaaatcagagttctcacagttcctcgacagaaacttgatgttaa
taatcatccttcttactattgtttttcttgttactgtgaccattgctggagtcagcatta
cattgcgcaaaaagaatttccaatcactcccagtggtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATACTACTTGCACGGTTACCAG 272 531 728 Antisense
CAGCCCCGAAAATTGTCCGGTCGAG 362 203 750 Antisense
GTCGAGGTTGTGATGGCTCCTACTA 8 475 769 Antisense
TAGTGTTGTCGCAGCAGTCGCAGAA 362 653 825 Antisense
ATCTCGCAGCACGTTTCTTTATTGC 463 33 898 Antisense
ATTGCTCCCAATTGGTTCGTATGCA 568 5 918 Antisense
TGAAGAGGTCCTCAGGCATCGTGCA 389 575 1074 Antisense
GCATCGTGCACTTCTCAAATCAGAG 92 309 1089 Antisense
AATCAGAGTTCTCACAGTTCCTCGA 437 171 1106 Antisense
ATCATCCTTCTTACTATTGTTTTTC 71 31 1150 Antisense
GAATTTCCAATCACTCCCAGTGGTT 385 325 1221 Antisense
Sequence Source Affymetrix Proprietary Database