[Home] | [Total List]

[183618_at]

Description C24B5.1 /REP_DB=WormBase Gene ID /WP=CE06859 /TR=Q18130 /GB=AAA96121.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 07      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 50      6grp_total > 07      4grp_total > 13      6grp_highest_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 999
1 2 3 4 range
A 782.6
(1.4)
P 		287.1
(-2.5)
P 		225.7
(-3)
P 		989.3
(3)
P 		764
B 646.6
(-0)
P 		343
(-2.3)
P 		241.3
(-3)
P 		1060.1
(3)
P 		819
C 734.6
(-0)
P 		337.8
(-2.5)
P 		257
(-3)
P 		1224.6
(3)
P 		968
avr 721.3
(0.4) 		322.6
(-2.4) 		241.3
(-3) 		1091.3
(3) 		850

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 363
1 2 3 4 5 6 range
A 718.4
(3)
P 		432.6
(-2.1)
P 		424.1
(-2.3)
P 		392.1
(-2.8)
P 		428.9
(-2.2)
P 		382.8
(-3)
P 		336
B 568.8
(3)
P 		427.4
(-1.5)
P 		380.7
(-3)
P 		419.6
(-1.8)
P 		410.2
(-2.1)
P 		429
(-1.5)
P 		188
C 448.2
(0.1)
P 		537.5
(3)
P 		400.6
(-1.5)
P 		508.5
(2)
P 		355.2
(-3)
P 		456.5
(0.3)
P 		182
avr 578.5
(3) 		465.8
(-0.7) 		401.8
(-2.9) 		440.1
(-1.6) 		398.1
(-3) 		422.8
(-2.2) 		180
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 229
1 2 3 4 range
A 284.9
(3)
P 		62.3
(-2.9)
P 		59
(-3)
P 		144.8
(-0.7)
P 		226
B 206.2
(2.3)
P 		84.7
(-2)
P 		55.9
(-3)
P 		225.9
(3)
P 		170
C 243.2
(3)
P 		97.1
(-2.7)
P 		89.6
(-3)
P 		206.5
(1.6)
P 		154
avr 244.8
(3) 		81.4
(-2.6) 		68.2
(-3) 		192.4
(1.2) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 132.4
(0.9)
P 		153.8
(3)
P 		92.4
(-3)
P 		99.5
(-2.3)
P 		129.4
(0.6)
P 		93.2
(-2.9)
P 		61
B 197.9
(3)
P 		142.3
(-0.2)
P 		92.4
(-3)
P 		111.1
(-1.9)
P 		166.7
(1.2)
P 		160
(0.8)
P 		106
C 166.1
(3)
P 		164
(2.8)
P 		102
(-3)
P 		102.3
(-3)
P 		114.9
(-1.8)
P 		152.8
(1.8)
P 		64
avr 165.5
(3) 		153.4
(2) 		95.6
(-3) 		104.3
(-2.3) 		137
(0.6) 		135.3
(0.4) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183618_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12196
Sequence Type Exemplar sequence
Representative Public ID C24B5.1 NCBI
Target Description C24B5.1 /REP_DB=WormBase Gene ID /WP=CE06859 /TR=Q18130 /GB=AAA96121.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072980(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072980 NCBI Caenorhabditis elegans C24B5.1 (C24B5.1) mRNA, complete cds. 11/11 None
SNAP00000040466 ENSEMBL cdna:SNAP chromosome:CEL140:V:9197319:9198371:1 11/11 None
GENEFINDER00000040471 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9193993:9198371:1 11/11 None
C24B5.1 ENSEMBL cdna:known chromosome:CEL140:V:9194270:9198448:1 gene:C24B5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9194270-9198372(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C24B5.1
Entrez Gene 179301 Entrez gene
SwissProt Q18130 EMBL-EBI
WormBase CE36981 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA96121 Hypothetical protein C24B5.1 [Caenorhabditis elegans] ref|NP_505381.2| C24B5.1 [Caenorhabditis elegans] 0.0
blast AAA96121 Hypothetical protein C24B5.1 [Caenorhabditis elegans] ref|NP_505381.2| C24B5.1 [Caenorhabditis elegans] 1.0E-180
blast AAA96121 Hypothetical protein C24B5.1 [Caenorhabditis elegans] ref|NP_505381.2| C24B5.1 [Caenorhabditis elegans] 1.0E-128
blast CAE72126 Hypothetical protein CBG19222 [Caenorhabditis briggsae] 1.0E-122
blast CAE63557 Hypothetical protein CBG08043 [Caenorhabditis briggsae] 3.0E-56
blast CAE63557 Hypothetical protein CBG08043 [Caenorhabditis briggsae] 7.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 1.0E-6
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 1.0E-6
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 1.0E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505381.2 7 78-100,112-134,159-181,201-220,244-266,338-360,375-397
C24B5.1 7 78-100,112-134,159-181,201-220,244-266,338-360,375-397
SNAP00000040466 4 21-43,69-91,163-185,200-222
GENEFINDER00000040471 7 118-140,231-253,278-300,320-339,363-385,457-479,494-516
Sequence
Target Sequence 
>C. ELEGANS:183618_AT
tatgctggtcccatcggttctaataattacttgcaactgtctagttgtgagcaaattgaa
tagccacatcaaaaaaaatccaggatctccggcagtgtccttcaatactgcggatgtggt
gctgaccactcagacatcagcaccaagtgctacattgaaaagctacacacgaatatcaag
cagattctcaatcgatgttgaaaaggcaccaaagaagaaaaagaagggaatacgatatac
ggatattcaattgactcggtcacttcttgttgtcacatgggcatttattttgttaaatat
tccaaattatggatacagaattgccagcattttatttggaatctcagagcagtcctcctt
gatgactgcaatttctcttggagctcacgtatttctttacactcatcatgcattcctatt
ctacctttacattttctactcaccacagatgaagcgtcgtctgaaaccaactgcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGCTGGTCCCATCGGTTCTAATA 425 655 471 Antisense
AAAATCCAGGATCTCCGGCAGTGTC 408 133 545 Antisense
AGTGTCCTTCAATACTGCGGATGTG 21 59 564 Antisense
GTGGTGCTGACCACTCAGACATCAG 536 489 586 Antisense
ATTGACTCGGTCACTTCTTGTTGTC 495 3 720 Antisense
ATCTCAGAGCAGTCCTCCTTGATGA 102 33 811 Antisense
GGAGCTCACGTATTTCTTTACACTC 468 521 850 Antisense
TACACTCATCATGCATTCCTATTCT 432 643 868 Antisense
TTCTACCTTTACATTTTCTACTCAC 495 691 889 Antisense
TACTCACCACAGATGAAGCGTCGTC 173 647 907 Antisense
AGCGTCGTCTGAAACCAACTGCAAT 39 79 923 Antisense
Sequence Source Affymetrix Proprietary Database