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[183617_at]

Description C16C8.4 /REP_DB=WormBase Gene ID /WP=CE08215 /TR=P91057 /GB=AAB37860.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 30.9
(-3)
A 		68.5
(-1)
A 		73.4
(-0.8)
A 		144.3
(3)
A 		113
B 54.7
(-3)
A 		80.9
(-1.9)
A 		75.3
(-2.1)
A 		193.5
(3)
P 		139
C 31
(-2.5)
A 		18.6
(-3)
A 		52.8
(-1.5)
A 		159.5
(3)
P 		141
avr 38.9
(-3) 		56
(-2.2) 		67.2
(-1.7) 		165.8
(3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 478
1 2 3 4 5 6 range
A 17.9
(-3)
A 		34.8
(-2.8)
A 		67.7
(-2.3)
A 		115.4
(-1.7)
P 		250.6
(0.1)
P 		473.5
(3)
P 		456
B 12.4
(-3)
A 		33.2
(-2.7)
A 		91.2
(-2)
A 		129.2
(-1.5)
M 		311.6
(0.8)
P 		490.7
(3)
P 		478
C 41.8
(-3)
A 		65.2
(-2.7)
A 		59.4
(-2.8)
A 		152.2
(-1.5)
P 		291
(0.5)
P 		470.5
(3)
P 		429
avr 24
(-3) 		44.4
(-2.7) 		72.8
(-2.4) 		132.3
(-1.6) 		284.4
(0.4) 		478.2
(3) 		454
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 11.2
(-3)
A 		14.9
(-0.8)
A 		19.2
(1.8)
A 		21.1
(3)
A 		10
B 17.5
(-3)
A 		20
(-2.3)
A 		17.4
(-3)
A 		41.2
(3)
P 		24
C 10.2
(-1.6)
A 		5.3
(-3)
A 		18.4
(0.6)
A 		26.9
(3)
P 		22
avr 13
(-3) 		13.4
(-2.9) 		18.3
(-1.1) 		29.7
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 3.3
(-3)
A 		12.4
(-2.5)
A 		14.7
(-2.4)
A 		29.3
(-1.6)
P 		75.6
(0.9)
P 		115.3
(3)
P 		112
B 4.3
(-3)
A 		11.1
(-2.8)
A 		22.2
(-2.4)
A 		34.2
(-2)
M 		126.6
(1.1)
P 		183
(3)
P 		179
C 15.5
(-3)
A 		19.9
(-2.8)
A 		15.1
(-3)
A 		30.6
(-2.3)
P 		94.2
(0.3)
P 		157.5
(3)
P 		142
avr 7.7
(-3) 		14.5
(-2.7) 		17.3
(-2.6) 		31.4
(-2) 		98.8
(0.8) 		151.9
(3) 		144
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183617_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5660
Sequence Type Exemplar sequence
Representative Public ID C16C8.4 NCBI
Target Description C16C8.4 /REP_DB=WormBase Gene ID /WP=CE08215 /TR=P91057 /GB=AAB37860.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062141(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062141 NCBI Caenorhabditis elegans C16C8.4 (C16C8.4) mRNA, complete cds. 11/11 None
SNAP00000014777 ENSEMBL cdna:SNAP chromosome:CEL140:II:3443578:3445359:-1 11/11 None
GENEFINDER00000014801 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3442485:3445359:-1 10/11 None
C16C8.4 ENSEMBL cdna:known chromosome:CEL140:II:3443578:3444360:-1 gene:C16C8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3443576-3444359(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C8.4
Entrez Gene 182671 Entrez gene
SwissProt P91057 EMBL-EBI
WormBase CE08215 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37860 Hypothetical protein C16C8.4 [Caenorhabditis elegans] ref|NP_494542.1| C16C8.4 [Caenorhabditis elegans] 1.0E-126
blast AAB37860 Hypothetical protein C16C8.4 [Caenorhabditis elegans] ref|NP_494542.1| C16C8.4 [Caenorhabditis elegans] 1.0E-109
blast AAB37859 Hypothetical protein C16C8.5 [Caenorhabditis elegans] ref|NP_494543.1| C16C8.5 [Caenorhabditis elegans] 1.0E-85
blast AAB37859 Hypothetical protein C16C8.5 [Caenorhabditis elegans] ref|NP_494543.1| C16C8.5 [Caenorhabditis elegans] 2.0E-55
blast AAB37856 Hypothetical protein C16C8.14 [Caenorhabditis elegans] ref|NP_494545.1| C16C8.14 [Caenorhabditis elegans] 7.0E-14
blast AAB37853 Hypothetical protein C16C8.11 [Caenorhabditis elegans] ref|NP_494548.1| C16C8.11 [Caenorhabditis elegans] 9.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR000626 EMBL-EBI Ubiquitin 2.3E-21
Pfam IPR000626 EMBL-EBI Ubiquitin 8.0E-4
Pfam IPR000626 EMBL-EBI Ubiquitin 2.6E-8
Pfam IPR000626 EMBL-EBI Ubiquitin 2.3E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000014801 1 164-186
Sequence
Target Sequence 
>C. ELEGANS:183617_AT
caatattccctcatccagaaacttccatccgagccgtccagcttcgtggaaaatcagctg
ctcctggaaactcaaacactttgtggacaacttctgaaaaatcaagaagaacaaaatatt
ctcaatgagaagctgagaaatgagcagaaaattatcaaattgaagcataacacagagatg
aaatcgatgcgagacaaattggagacacttacaactgcccaggcggcgcaaaaattggat
tttgagcgacatttcgaaatgatgagacaatcccattcggcgaaaattgtgaaaatggaa
agagatttgagaaatatgaaatacgatttgcattcgttgagaagtgatatggatagtcgg
aaaaactgcgaaaatcgtgctgctccgaaaccagaatttcaaatttttgtgaaggttctg
ggagtgagctacgctttcaaaattcaccgagaagatacagttttcgatataaaaaatgat
attgaacatcgtcatgacattccccaacattcatattggcttagtttcagtggaaaaaga
ttggaggatcattgttcaatcggcgactac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATATTCCCTCATCCAGAAACTTC 552 179 76 Antisense
AGCCGTCCAGCTTCGTGGAAAATCA 629 81 107 Antisense
GCTGCTCCTGGAAACTCAAACACTT 257 297 132 Antisense
TGGAGACACTTACAACTGCCCAGGC 154 547 275 Antisense
CAACTGCCCAGGCGGCGCAAAAATT 588 185 287 Antisense
TGATGAGACAATCCCATTCGGCGAA 416 565 335 Antisense
AATCGTGCTGCTCCGAAACCAGAAT 350 169 448 Antisense
GAAGGTTCTGGGAGTGAGCTACGCT 645 333 486 Antisense
GAGCTACGCTTTCAAAATTCACCGA 354 383 501 Antisense
TGAACATCGTCATGACATTCCCCAA 627 573 558 Antisense
GGATCATTGTTCAATCGGCGACTAC 639 511 621 Antisense
Sequence Source Affymetrix Proprietary Database