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[183616_s_at]

Description F47B3.7 /REP_DB=WormBase Gene ID /WP=CE10628 /TR=O01556 /GB=AAB52362.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 08      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 8.1
(-3)
A 		9.3
(-2.8)
A 		23.5
(-0.8)
A 		50.3
(3)
A 		42
B 20.6
(2.1)
A 		23.7
(3)
A 		10.7
(-0.9)
A 		3.5
(-3)
A 		20
C 9.4
(-1.8)
A 		3.5
(-3)
A 		14
(-0.8)
A 		32.8
(3)
A 		29
avr 12.7
(-2.8) 		12.2
(-3) 		16.1
(-1.6) 		28.9
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 2
(-3)
A 		1.3
(-3)
A 		15.4
(-2.2)
A 		32.9
(-1.2)
A 		47.6
(-0.3)
A 		105.9
(3)
P 		105
B 16.9
(-2.1)
A 		2.4
(-2.9)
A 		35.2
(-1)
A 		1.4
(-3)
A 		79.1
(1.6)
P 		101.8
(3)
P 		100
C 37.4
(-1.6)
A 		26.7
(-2.1)
A 		8.7
(-3)
A 		41.7
(-1.4)
A 		77.5
(0.3)
P 		133.5
(3)
P 		125
avr 18.8
(-2.5) 		10.1
(-3) 		19.8
(-2.4) 		25.3
(-2.1) 		68.1
(0.4) 		113.7
(3) 		104
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 3
(-1.9)
A 		2
(-3)
A 		6.2
(1.7)
A 		7.4
(3)
A 		5
B 6.6
(3)
A 		5.9
(2.3)
A 		2.5
(-1.2)
A 		0.8
(-3)
A 		6
C 3.1
(-0.2)
A 		1
(-3)
A 		4.9
(2.2)
A 		5.5
(3)
A 		5
avr 4.2
(1.5) 		3
(-3) 		4.5
(2.6) 		4.6
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.5
(-3)
A 		3.3
(-2.3)
A 		8.3
(-1.1)
A 		14.4
(0.3)
A 		25.8
(3)
P 		25
B 5.9
(-2.1)
A 		0.8
(-2.9)
A 		8.6
(-1.7)
A 		0.4
(-3)
A 		32.1
(2.1)
P 		38
(3)
P 		38
C 13.9
(-1.3)
A 		8.1
(-2.2)
A 		2.2
(-3)
A 		8.4
(-2.1)
A 		25.1
(0.2)
P 		44.7
(3)
P 		43
avr 6.7
(-2.3) 		3.1
(-3) 		4.7
(-2.7) 		5.7
(-2.5) 		23.9
(0.8) 		36.2
(3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183616_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.150
Sequence Type Exemplar sequence
Representative Public ID F47B3.7 NCBI
Target Description F47B3.7 /REP_DB=WormBase Gene ID /WP=CE10628 /TR=O01556 /GB=AAB52362.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058875(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058875 NCBI Caenorhabditis elegans F47B3.7 (F47B3.7) mRNA, complete cds. 11/11 A 
GENEFINDER00000030473 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3963117:3969943:-1 11/11 None
SNAP00000030468 ENSEMBL cdna:SNAP chromosome:CEL140:I:3968166:3969943:-1 11/11 None
F47B3.7 ENSEMBL cdna:known chromosome:CEL140:I:3968166:3970012:-1 gene:F47B3.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030469 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3970163-3971279(+) 53.78 53.78
chrI:3968165-3969943(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47B3.7
Entrez Gene 171983 Entrez gene
SwissProt O01556 EMBL-EBI
WormBase CE10628 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4721 phosphoprotein phosphatase activity inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52362 Hypothetical protein F47B3.7 [Caenorhabditis elegans] ref|NP_491276.1| F47B3.7 [Caenorhabditis elegans] 0.0
blast AAB52356 Hypothetical protein F47B3.1 [Caenorhabditis elegans] ref|NP_491278.1| F47B3.1 [Caenorhabditis elegans] 0.0
blast AAB52361 Hypothetical protein F47B3.6 [Caenorhabditis elegans] ref|NP_491275.2| F47B3.6 [Caenorhabditis elegans] 1.0E-175
blast AAB52356 Hypothetical protein F47B3.1 [Caenorhabditis elegans] ref|NP_491278.1| F47B3.1 [Caenorhabditis elegans] 3.0E-92
blast AAB52361 Hypothetical protein F47B3.6 [Caenorhabditis elegans] ref|NP_491275.2| F47B3.6 [Caenorhabditis elegans] 4.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.3E-102
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 6.2E-92
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 3.6E-14
Sequence
Target Sequence 
>C. ELEGANS:183616_S_AT
gagttggccagagtgaagtgcgaacaatattggccagctgtcgaaggtcagaccaataca
tatgtcagcaagggccacaccatcactatcaacaatttgggcgtcgggacactctcacca
gatgatgattttatcaatgtgactaatttggaacttgtatgggccggtaaaacaagatcc
atcactcactatcagtggactaactggccggatcatggtgctccaccgattaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTTGGCCAGAGTGAAGTGCGAAC 107 397 511 Antisense
GTGCGAACAATATTGGCCAGCTGTC 605 477 528 Antisense
GGCCAGCTGTCGAAGGTCAGACCAA 28 535 542 Antisense
ACATATGTCAGCAAGGGCCACACCA 344 105 568 Antisense
CCACACCATCACTATCAACAATTTG 533 275 585 Antisense
CAACAATTTGGGCGTCGGGACACTC 350 187 600 Antisense
TAATTTGGAACTTGTATGGGCCGGT 581 629 654 Antisense
GGGCCGGTAAAACAAGATCCATCAC 477 309 671 Antisense
ACTCACTATCAGTGGACTAACTGGC 184 99 694 Antisense
ACTAACTGGCCGGATCATGGTGCTC 197 83 709 Antisense
GGATCATGGTGCTCCACCGATTAAT 545 505 720 Antisense
Sequence Source Affymetrix Proprietary Database