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[183615_at]

Description W02D3.4 /REP_DB=WormBase Gene ID /WP=CE14424 /TR=O01810 /GB=AAK21483.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 95      4grp_highest_8_8 > 26      4grp_high_8_8 > 58      6grp_highest_nonorm > 96      6grp_total > 75      4grp_total > 61      6grp_highest_sub > In      6grp_high1_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 804
1 2 3 4 range
A 976.8
(3)
P 		590.7
(-1)
P 		684.1
(-0)
P 		398.2
(-3)
P 		579
B 694.1
(3)
P 		649.2
(-0.3)
P 		659.7
(0.4)
P 		613.6
(-3)
P 		81
C 788.7
(0)
P 		716
(-0.5)
P 		1188.8
(3)
P 		384.5
(-3)
P 		804
avr 819.9
(2.6) 		652
(-0) 		844.2
(3) 		465.4
(-3) 		379

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 835
1 2 3 4 5 6 range
A 627.4
(-3)
P 		955.7
(3)
P 		718.4
(-1.3)
P 		893.1
(1.9)
P 		882.8
(1.7)
P 		847
(1)
P 		328
B 657
(-3)
P 		701.4
(-2.5)
P 		809.3
(-1.1)
P 		934.1
(0.4)
P 		781.7
(-1.5)
P 		1145.3
(3)
P 		488
C 582.6
(-2.7)
P 		540.1
(-3)
P 		749.5
(-1.5)
P 		1198.8
(1.7)
P 		715.3
(-1.7)
P 		1375.1
(3)
P 		835
avr 622.3
(-3) 		732.4
(-1.7) 		759.1
(-1.4) 		1008.7
(1.6) 		793.3
(-0.9) 		1122.5
(3) 		500
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 356
1 2 3 4 range
A 355.7
(3)
P 		128.2
(-1.6)
P 		178.8
(-0.6)
P 		58.3
(-3)
P 		297
B 221.3
(3)
P 		160.3
(-1)
P 		152.9
(-1.5)
P 		130.8
(-3)
P 		91
C 261.1
(0.4)
P 		205.9
(-0.6)
P 		414.3
(3)
P 		64.8
(-3)
P 		350
avr 279.4
(3) 		164.8
(-0.5) 		248.7
(2.1) 		84.6
(-3) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 345
1 2 3 4 5 6 range
A 115.7
(-3)
P 		339.9
(3)
P 		156.5
(-1.9)
P 		226.5
(-0)
P 		266.4
(1)
P 		206.2
(-0.6)
P 		224
B 228.6
(-2.2)
P 		233.5
(-2)
P 		196.5
(-3)
P 		247.4
(-1.7)
P 		317.6
(0.2)
P 		427.1
(3)
P 		231
C 216
(-2)
P 		164.8
(-3)
P 		190.8
(-2.5)
P 		241.1
(-1.5)
P 		231.4
(-1.6)
P 		460.3
(3)
P 		296
avr 186.8
(-2.8) 		246.1
(-0.9) 		181.3
(-3) 		238.3
(-1.1) 		271.8
(-0) 		364.5
(3) 		183
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183615_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.967
Sequence Type Exemplar sequence
Representative Public ID W02D3.4 NCBI
Target Description W02D3.4 /REP_DB=WormBase Gene ID /WP=CE14424 /TR=O01810 /GB=AAK21483.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059523(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059523 NCBI Caenorhabditis elegans W02D3.4 (W02D3.4) mRNA, complete cds. 11/11 None
SNAP00000042714 ENSEMBL cdna:SNAP chromosome:CEL140:I:6727755:6729180:-1 11/11 None
GENEFINDER00000042732 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6727785:6729180:-1 11/11 None
W02D3.4 ENSEMBL cdna:known chromosome:CEL140:I:6727755:6729180:-1 gene:W02D3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6727683-6729109(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W02D3.4
Entrez Gene 189111 Entrez gene
SwissProt O01810 EMBL-EBI
WormBase CE14424 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK21483 Hypothetical protein W02D3.4 [Caenorhabditis elegans] ref|NP_491924.1| W02D3.4 [Caenorhabditis elegans] 0.0
blast CAE67263 Hypothetical protein CBG12710 [Caenorhabditis briggsae] 1.0E-176
blast CAE67263 Hypothetical protein CBG12710 [Caenorhabditis briggsae] 1.0E-172
blast NP_498062 R144.6 [Caenorhabditis elegans] gb|AAU87817.1| Hypothetical protein R144.6 [Caenorhabditis elegans] sp|Q10000|YRR6_CAEEL Hypothetical protein R144.6 in chromosome III 1.0E-98
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491924.1 9 2-24,39-61,81-103,118-140,198-220,235-257,270-292,302-321,330-349
W02D3.4 9 2-24,39-61,81-103,118-140,198-220,235-257,270-292,302-321,330-349
SNAP00000042714 9 2-24,39-61,81-103,118-140,198-220,235-257,270-292,302-321,330-349
GENEFINDER00000042732 8 2-24,39-61,81-103,118-140,198-220,235-257,270-292,302-321
Sequence
Target Sequence 
>C. ELEGANS:183615_AT
aaaccagtcgtacatctttcgatttggagaatctgaattctgaagagaagaaggcattga
acacgacagaatcatcagatgatggcggtctggaaactgaagtgttgagaccggataaaa
atcttaattcaggaactcagagatttttcgccttcatcactgccattgttgccggattct
tttacggaatgacatttgtaccagtgatcagaatgattgataatccacaattatatccat
tttatccacaagatggtatttcgtacgtcttctcccattattttggaattttcattacat
ccactatcattttcgtcatctattccatttttagaagaaaccagccatacgctcctccaa
acttattccttcctggaatggctgcaggatgtctgtgggctgtcgctcaaacatcattct
tcgtggcaaatcaacatttatcacaaaccgtaacatttcccattatttctcaaatgcctg
gatgtattgcggccgcttggagcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACCAGTCGTACATCTTTCGATTT 123 125 461 Antisense
GGAACTCAGAGATTTTTCGCCTTCA 635 529 592 Antisense
GCCATTGTTGCCGGATTCTTTTACG 298 281 622 Antisense
AGATGGTATTTCGTACGTCTTCTCC 67 67 711 Antisense
GAATTTTCATTACATCCACTATCAT 43 325 746 Antisense
ATCATTTTCGTCATCTATTCCATTT 277 31 766 Antisense
TCCTCCAAACTTATTCCTTCCTGGA 682 591 813 Antisense
CTGCAGGATGTCTGTGGGCTGTCGC 525 237 842 Antisense
GTCGCTCAAACATCATTCTTCGTGG 493 473 862 Antisense
GTAACATTTCCCATTATTTCTCAAA 621 461 910 Antisense
GATGTATTGCGGCCGCTTGGAGCAT 640 409 941 Antisense
Sequence Source Affymetrix Proprietary Database