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[183614_at]

Description Y39A1A.6 /REP_DB=WormBase Gene ID /WP=CE19125 /TR=Q9XX18 /GB=CAA21022.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 27      4grp_highest_8_8 > 03      4grp_high_8_8 > 46      6grp_highest_nonorm > 40      6grp_total > 17      4grp_total > 41      6grp_highest_sub > De      6grp_high1_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 812
1 2 3 4 range
A 605.7
(-3)
P 		1418
(3)
P 		1197.5
(1.4)
P 		1074.6
(0.5)
P 		812
B 867
(-3)
P 		1222.2
(3)
P 		1164.7
(2)
P 		956.1
(-1.5)
P 		355
C 742
(-3)
P 		1209.1
(2.1)
P 		1287
(3)
P 		894
(-1.3)
P 		545
avr 738.2
(-3) 		1283.1
(3) 		1216.4
(2.3) 		974.9
(-0.4) 		545

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 666
1 2 3 4 5 6 range
A 1116.1
(3)
P 		657.1
(-1.1)
P 		824.9
(0.4)
P 		576.7
(-1.9)
P 		449.8
(-3)
P 		537.3
(-2.2)
P 		666
B 1013.5
(3)
P 		822.8
(0.6)
P 		651.1
(-1.5)
P 		687.3
(-1.1)
P 		530.6
(-3)
P 		689.6
(-1)
P 		483
C 949.8
(3)
P 		699.2
(-0.9)
P 		567.6
(-3)
P 		637.8
(-1.9)
P 		708.5
(-0.8)
P 		850.5
(1.4)
P 		382
avr 1026.5
(3) 		726.4
(-0.9) 		681.2
(-1.5) 		633.9
(-2.1) 		563
(-3) 		692.5
(-1.3) 		464
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 298
1 2 3 4 range
A 220.5
(-0.6)
P 		307.8
(2.8)
P 		313
(3)
P 		157.3
(-3)
P 		156
B 276.5
(1.5)
P 		301.8
(3)
P 		269.9
(1)
P 		203.7
(-3)
P 		98
C 245.6
(-1.1)
P 		347.6
(1)
P 		448.5
(3)
P 		150.7
(-3)
P 		298
avr 247.5
(-0.3) 		319.1
(2.1) 		343.8
(3) 		170.6
(-3) 		173

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 224
1 2 3 4 5 6 range
A 205.7
(1.4)
P 		233.7
(3)
P 		179.6
(-0.2)
P 		146.3
(-2.1)
P 		135.7
(-2.7)
P 		130.8
(-3)
P 		103
B 352.6
(3)
P 		273.9
(0.6)
P 		158.1
(-3)
P 		182.1
(-2.3)
P 		215.6
(-1.2)
P 		257.2
(0.1)
P 		195
C 352
(3)
P 		213.4
(-0.7)
P 		144.5
(-2.6)
P 		128.3
(-3)
P 		229.2
(-0.3)
P 		284.7
(1.2)
P 		224
avr 303.4
(3) 		240.3
(0.5) 		160.7
(-2.7) 		152.2
(-3) 		193.5
(-1.4) 		224.2
(-0.1) 		151
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183614_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7136
Sequence Type Exemplar sequence
Representative Public ID Y39A1A.6 NCBI
Target Description Y39A1A.6 /REP_DB=WormBase Gene ID /WP=CE19125 /TR=Q9XX18 /GB=CAA21022.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066939(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066939 NCBI Caenorhabditis elegans Y39A1A.6 (Y39A1A.6) mRNA, complete cds. 11/11 None
SNAP00000012907 ENSEMBL cdna:SNAP chromosome:CEL140:III:10615344:10617668:1 11/11 None
GENEFINDER00000012935 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10615344:10617668:1 11/11 None
Y39A1A.6 ENSEMBL cdna:known chromosome:CEL140:III:10615343:10617700:1 gene:Y39A1A.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10615339-10617664(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39A1A.6
Entrez Gene 176482 Entrez gene
SwissProt Q9XX18 EMBL-EBI
WormBase CE19125 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1586877_AT similar to mitochondrial ribosomal protein L22 isoform a cfa
CANINE_2:CFA.5875.1.A1_A_AT similar to mitochondrial ribosomal protein L22 isoform a cfa
CANINE_2:CFA.5875.2.A1_S_AT similar to mitochondrial ribosomal protein L22 isoform a cfa
CANINE_2:CFA.5875.3.A1_S_AT similar to mitochondrial ribosomal protein L22 isoform a cfa
CANINE_2:CFA.5875.3.A1_X_AT similar to mitochondrial ribosomal protein L22 isoform a cfa
DROSOPHILA_2:1640889_AT mitochondrial ribosomal protein L22 dm
DROSGENOME1:145210_AT mitochondrial ribosomal protein L22 dm
CHICKEN:GGA.1889.1.S1_AT mitochondrial ribosomal protein L22 gga
HU35KSUBC:RC_AA443802_AT mitochondrial ribosomal protein L22 hs
HG-U133A:218339_AT mitochondrial ribosomal protein L22 hs
HG-U133_PLUS_2:218339_AT mitochondrial ribosomal protein L22 hs
HG-U133A_2:218339_AT mitochondrial ribosomal protein L22 hs
U133_X3P:G7661815_3P_S_AT mitochondrial ribosomal protein L22 hs
U133_X3P:G7661815_3P_AT mitochondrial ribosomal protein L22 hs
U133_X3P:218339_3P_AT mitochondrial ribosomal protein L22 hs
HG-U95B:52010_AT mitochondrial ribosomal protein L22 hs
MOE430A:1435995_AT mitochondrial ribosomal protein L22 mm
MOUSE430A_2:1435995_AT mitochondrial ribosomal protein L22 mm
MOUSE430_2:1435995_AT mitochondrial ribosomal protein L22 mm
MU19KSUBB:TC34557_AT Mitochondrial ribosomal protein L22, mRNA (cDNA clone MGC:74332 IMAGE:6703228) mm
MU19KSUBB:TC34557_G_AT Mitochondrial ribosomal protein L22, mRNA (cDNA clone MGC:74332 IMAGE:6703228) mm
RG-U34C:RC_AI175327_AT mitochondrial ribosomal protein L22 (predicted) rn
RAE230A:1388860_AT mitochondrial ribosomal protein L22 (predicted) rn
RAT230_2:1388860_AT mitochondrial ribosomal protein L22 (predicted) rn
RG-U34C:RC_AI179721_AT Mitochondrial ribosomal protein L22 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21022 Hypothetical protein Y39A1A.6 [Caenorhabditis elegans] ref|NP_499340.1| Y39A1A.6 [Caenorhabditis elegans] 1.0E-154
blast CAE71438 Hypothetical protein CBG18349 [Caenorhabditis briggsae] 1.0E-138
blast AAF48662 CG4742-PA [Drosophila melanogaster] ref|NP_523379.2| CG4742-PA [Drosophila melanogaster] gb|AAL48591.1| RE06857p [Drosophila melanogaster] 1.0E-23
Sequence
Target Sequence 
>C. ELEGANS:183614_AT
atggccaccaaactacattgtacccgaaacagggctcccaaaaccgaaagaagtattcca
ttgcaaggaatcggttcatttttcgcccaaaagaatgtgggcggcatgtcaattggtttg
gaagatgaatgttgatgaagcaatcacacaattggatatgcaacagttaaaggcgtgcaa
ccttctgatggatacaatcaagaaagcgaaaagccgagcagccgacgaattccatatcga
atatccgtcacaaatgtatgtggccgatgcgttccccgttcaatcgaatattgttaaagg
agcccgccgtcacgctcacgacaactggaacaccattcgataccgatacattcacatttt
cgtccgtctagaagaaggtccggctccaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCCACCAAACTACATTGTACCC 34 55 312 Antisense
CATTGTACCCGAAACAGGGCTCCCA 358 207 327 Antisense
GCAAGGAATCGGTTCATTTTTCGCC 235 321 374 Antisense
TGTGGGCGGCATGTCAATTGGTTTG 358 553 407 Antisense
GGCGTGCAACCTTCTGATGGATACA 331 541 483 Antisense
CGAGCAGCCGACGAATTCCATATCG 401 251 526 Antisense
CAAATGTATGTGGCCGATGCGTTCC 353 193 562 Antisense
GTCACGCTCACGACAACTGGAACAC 661 463 620 Antisense
ACTGGAACACCATTCGATACCGATA 701 95 635 Antisense
CATTCACATTTTCGTCCGTCTAGAA 89 217 660 Antisense
GTCTAGAAGAAGGTCCGGCTCCACA 244 469 677 Antisense
Sequence Source Affymetrix Proprietary Database