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[183613_at]

Description R05A10.7 /REP_DB=WormBase Gene ID /WP=CE16293 /TR=O45704 /GB=CAB05268.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 1.7
(-2.9)
A 		31.2
(0.9)
A 		1.2
(-3)
A 		46.9
(3)
A 		46
B 27.1
(1.4)
A 		5.4
(-2.4)
A 		2
(-3)
A 		36.4
(3)
A 		34
C 4.6
(-3)
A 		33.6
(1.2)
A 		21
(-0.6)
A 		46.3
(3)
M 		42
avr 11.1
(-2.5) 		23.4
(-0.4) 		8.1
(-3) 		43.2
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 3.7
(-2.8)
A 		19.8
(0.5)
A 		28.9
(2.4)
A 		16.1
(-0.3)
A 		31.8
(3)
A 		2.9
(-3)
A 		29
B 20.4
(0.8)
A 		3.9
(-2.4)
A 		2.5
(-2.7)
A 		23
(1.3)
A 		32
(3)
P 		0.8
(-3)
A 		31
C 1.7
(-3)
A 		27.3
(0.5)
A 		2.8
(-2.8)
A 		45.2
(3)
A 		20
(-0.5)
A 		3.8
(-2.7)
A 		44
avr 8.6
(-1.6) 		17
(0.4) 		11.4
(-0.9) 		28.1
(3) 		27.9
(3) 		2.5
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.6
(-2.7)
A 		6.8
(2.9)
A 		0.3
(-3)
A 		6.9
(3)
A 		7
B 8.6
(3)
A 		1.3
(-2.4)
A 		0.5
(-3)
A 		7.8
(2.4)
A 		8
C 1.5
(-3)
A 		9.7
(3)
A 		7.3
(1.2)
A 		7.8
(1.6)
M 		8
avr 3.6
(-1.9) 		5.9
(1) 		2.7
(-3) 		7.5
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.7
(-3)
A 		7
(1.2)
A 		6.3
(0.8)
A 		4.1
(-0.7)
A 		9.6
(3)
A 		0.7
(-3)
A 		9
B 7.1
(0.2)
A 		1.3
(-2.5)
A 		0.6
(-2.9)
A 		6.1
(-0.3)
A 		13
(3)
P 		0.3
(-3)
A 		13
C 0.6
(-3)
A 		8.3
(2.4)
A 		0.7
(-2.9)
A 		9.1
(3)
A 		6.5
(1.2)
A 		1.3
(-2.5)
A 		9
avr 2.8
(-1.7) 		5.5
(0.2) 		2.5
(-1.9) 		6.4
(0.8) 		9.7
(3) 		0.8
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183613_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9662
Sequence Type Exemplar sequence
Representative Public ID R05A10.7 NCBI
Target Description R05A10.7 /REP_DB=WormBase Gene ID /WP=CE16293 /TR=O45704 /GB=CAB05268.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070314(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070314 NCBI Caenorhabditis elegans R05A10.7 (R05A10.7) mRNA, complete cds. 9/11 None
GENEFINDER00000012481 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14160374:14161872:-1 9/11 None
R05A10.7 ENSEMBL cdna:known chromosome:CEL140:IV:14160374:14161872:-1 gene:R05A10.7 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012473 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14160382-14162633(-) 86.27 86.27
Public Domain and Genome References
Gene Title
Ensembl R05A10.7
Entrez Gene 187597 Entrez gene
SwissProt O45704 EMBL-EBI
WormBase CE28636 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05268 Hypothetical protein R05A10.7 [Caenorhabditis elegans] ref|NP_502715.1| R05A10.7 [Caenorhabditis elegans] 1.0E-178
blast NP_494666 C17A2.6 [Caenorhabditis elegans] pir||T31915 hypothetical protein C17A2.6 - Caenorhabditis elegans 1.0E-86
blast CAB05619 Hypothetical protein T15D6.9 [Caenorhabditis elegans] ref|NP_493140.1| T15D6.9 [Caenorhabditis elegans] 2.0E-84
Sequence
Target Sequence 
>C. ELEGANS:183613_AT
tagcttttcacagcaattttgccgttttaaatacaggtaagttgcctgacgttctgggct
acttcccgacaaattcaatggaattattgaaacgccagaggcaagctggtgcaaataata
tattcgttccaagaacaagctacactatgaaaattttcaaatggtgggtactgtgtgctc
ttacagatgactgtatgagcccaccaggatctactacactttgtgaatatacgtctgaca
atttcaataactctgctaattgtttcagatatgatcaatcgattcttaatatactcttgc
tcaatgattttcaagacagtgataaattcttttcttctaatttggagaattcattttata
gaccattgatttcaacagcattttttgcctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGCTTTTCACAGCAATTTTGCCGT 256 647 569 Antisense
AAGTTGCCTGACGTTCTGGGCTACT 206 157 607 Antisense
TTCTGGGCTACTTCCCGACAAATTC 267 695 620 Antisense
GAAACGCCAGAGGCAAGCTGGTGCA 203 359 657 Antisense
CGTTCCAAGAACAAGCTACACTATG 104 247 693 Antisense
GTGGGTACTGTGTGCTCTTACAGAT 230 489 732 Antisense
TATGAGCCCACCAGGATCTACTACA 477 653 762 Antisense
ACCAGGATCTACTACACTTTGTGAA 28 87 771 Antisense
TCGATTCTTAATATACTCTTGCTCA 276 603 847 Antisense
GACAGTGATAAATTCTTTTCTTCTA 406 369 883 Antisense
GATTTCAACAGCATTTTTTGCCTAT 444 427 936 Antisense
Sequence Source Affymetrix Proprietary Database