[Home] | [Total List]

[183612_s_at]

Description C06A5.4 /REP_DB=WormBase Gene ID /WP=CE07951 /TR=O01474 /GB=AAB52438.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 10      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 8
(-2.9)
A 		20.6
(-2.3)
A 		6.9
(-3)
A 		120.9
(3)
A 		114
B 2.4
(-3)
A 		6.7
(-2.3)
A 		4.4
(-2.7)
A 		38.8
(3)
A 		36
C 4.4
(-3)
A 		3.9
(-3)
A 		7.9
(-2.7)
A 		86
(3)
P 		82
avr 4.9
(-3) 		10.4
(-2.6) 		6.4
(-2.9) 		81.9
(3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 25.4
(1.4)
A 		4
(-3)
A 		5.1
(-2.8)
A 		6
(-2.6)
A 		23.1
(0.9)
A 		33.4
(3)
A 		29
B 4.1
(-2.9)
A 		5.2
(-2.8)
A 		9.6
(-2.5)
A 		33
(-0.8)
A 		3.1
(-3)
A 		84.8
(3)
M 		82
C 1.3
(-3)
A 		31.2
(1.2)
A 		14.6
(-1.1)
A 		44.3
(3)
A 		5.5
(-2.4)
A 		43.4
(2.9)
A 		43
avr 10.3
(-2.9) 		13.5
(-2.5) 		9.8
(-3) 		27.8
(-0.6) 		10.6
(-2.9) 		53.9
(3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 2.9
(-2.6)
A 		4.5
(-2)
A 		1.8
(-3)
A 		17.7
(3)
A 		16
B 0.8
(-3)
A 		1.7
(-2.3)
A 		1
(-2.8)
A 		8.3
(3)
A 		8
C 1.5
(-2.8)
A 		1.1
(-3)
A 		2.8
(-2.2)
A 		14.5
(3)
P 		13
avr 1.7
(-3) 		2.4
(-2.6) 		1.9
(-2.9) 		13.5
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 4.7
(0.1)
A 		1.4
(-2.7)
A 		1.1
(-3)
A 		1.5
(-2.7)
A 		7
(2.1)
A 		8.1
(3)
A 		7
B 1.4
(-3)
A 		1.7
(-2.9)
A 		2.3
(-2.8)
A 		8.7
(-1.5)
A 		1.3
(-3)
A 		31.6
(3)
M 		30
C 0.5
(-3)
A 		9.5
(0.9)
A 		3.7
(-1.6)
A 		8.9
(0.6)
A 		1.8
(-2.4)
A 		14.5
(3)
A 		14
avr 2.2
(-3) 		4.2
(-2.2) 		2.4
(-2.9) 		6.4
(-1.4) 		3.4
(-2.5) 		18.1
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183612_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2252
Sequence Type Exemplar sequence
Representative Public ID C06A5.4 NCBI
Target Description C06A5.4 /REP_DB=WormBase Gene ID /WP=CE07951 /TR=O01474 /GB=AAB52438.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059326(11), NM_062114(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059326 NCBI Caenorhabditis elegans C06A5.4 (C06A5.4) mRNA, complete cds. 11/11 A 
NM_062114 NCBI Caenorhabditis elegans F14D2.9 (F14D2.9) mRNA, complete cds. 11/11 A 
GENEFINDER00000012794 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5988412:5989723:-1 11/11 None
SNAP00000012783 ENSEMBL cdna:SNAP chromosome:CEL140:I:5988926:5989723:-1 11/11 None
SNAP00000037068 ENSEMBL cdna:SNAP chromosome:CEL140:II:3354738:3355625:-1 11/11 None
GENEFINDER00000037074 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3354306:3355625:-1 11/11 None
C06A5.4 ENSEMBL cdna:known chromosome:CEL140:I:5988926:5989723:-1 gene:C06A5.4 11/11 A 
F14D2.9 ENSEMBL cdna:known chromosome:CEL140:II:3352496:3356298:-1 gene:F14D2.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title

Ensembl C06A5.4
F14D2.9
Entrez Gene 182282 Entrez gene
184459 Entrez gene
SwissProt O01474 EMBL-EBI
O44807 EMBL-EBI
WormBase CE07951 Wormbase
CE36822 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494515 F14D2.9 [Caenorhabditis elegans] gb|AAB94964.2| Hypothetical protein F14D2.9 [Caenorhabditis elegans] 0.0
blast AAB52438 Hypothetical protein C06A5.4 [Caenorhabditis elegans] ref|NP_491727.1| C06A5.4 [Caenorhabditis elegans] 1.0E-125
blast AAB52438 Hypothetical protein C06A5.4 [Caenorhabditis elegans] ref|NP_491727.1| C06A5.4 [Caenorhabditis elegans] 1.0E-111
blast AAB52438 Hypothetical protein C06A5.4 [Caenorhabditis elegans] ref|NP_491727.1| C06A5.4 [Caenorhabditis elegans] 2.0E-96
blast AAB52438 Hypothetical protein C06A5.4 [Caenorhabditis elegans] ref|NP_491727.1| C06A5.4 [Caenorhabditis elegans] 3.0E-96
blast NP_494515 F14D2.9 [Caenorhabditis elegans] gb|AAB94964.2| Hypothetical protein F14D2.9 [Caenorhabditis elegans] 2.0E-80
blast NP_494515 F14D2.9 [Caenorhabditis elegans] gb|AAB94964.2| Hypothetical protein F14D2.9 [Caenorhabditis elegans] 3.0E-80
Sequence
Target Sequence 
>C. ELEGANS:183612_S_AT
aacgaaggatcactgattgcctgtttgatagcgacgacgaagttctcgagtcaccgggaa
gggaagaactcagaaagctattgctttctgattatgaggatgtaggatcagttacgatag
atacgccaaagctaaaaaatcggaatgttcgccttcgtggagcaggtcggccacagaaag
gtggcgatgattataaagattatggaagaagcgaaatggaacagtttcttcgtcttgtct
cggacaagccttttctgtggcacacaaaagattcggattttcacagaaaaaaagagaaag
ggatgcctgcgtgggccgaaatcgagaggacttgcaatacgtttatggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGAAGGATCACTGATTGCCTGTT 430 145 65 Antisense
GATTGCCTGTTTGATAGCGACGACG 447 433 79 Antisense
ATTGCTTTCTGATTATGAGGATGTA 540 5 144 Antisense
GAGGATGTAGGATCAGTTACGATAG 281 403 160 Antisense
GTTACGATAGATACGCCAAAGCTAA 628 445 175 Antisense
AAAATCGGAATGTTCGCCTTCGTGG 410 133 200 Antisense
GCAGGTCGGCCACAGAAAGGTGGCG 254 311 226 Antisense
GAGAAAGGGATGCCTGCGTGGGCCG 80 393 358 Antisense
ATGCCTGCGTGGGCCGAAATCGAGA 151 41 367 Antisense
GGGCCGAAATCGAGAGGACTTGCAA 358 399 377 Antisense
GAGGACTTGCAATACGTTTATGGGA 190 403 390 Antisense
Sequence Source Affymetrix Proprietary Database