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[183611_at]

Description C06A5.4 /REP_DB=WormBase Gene ID /WP=CE07951 /TR=O01474 /GB=AAB52438.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 20      6grp_total > 86      4grp_total > 27      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 94.4
(-0.8)
P 		64.5
(-2.5)
A 		55.9
(-3)
A 		161
(3)
P 		105
B 59.4
(-3)
A 		129.7
(1.8)
P 		90
(-0.9)
P 		147.8
(3)
P 		88
C 124.9
(-0.2)
P 		186.7
(3)
M 		69.3
(-3)
P 		151.7
(1.2)
P 		117
avr 92.9
(-1.4) 		127
(1.1) 		71.7
(-3) 		153.5
(3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 185
1 2 3 4 5 6 range
A 12.6
(-3)
A 		53.7
(-1.4)
A 		92.7
(0.2)
P 		71.5
(-0.7)
M 		127.8
(1.6)
P 		163.8
(3)
P 		151
B 54.4
(-3)
P 		83.6
(-1.7)
A 		85.7
(-1.6)
P 		104.7
(-0.8)
P 		105.4
(-0.8)
P 		190.5
(3)
P 		136
C 61
(-2.9)
P 		75.9
(-2.3)
M 		59.5
(-3)
P 		151.1
(1)
P 		102.8
(-1.1)
P 		197.2
(3)
P 		138
avr 42.7
(-3) 		71.1
(-1.8) 		79.3
(-1.4) 		109.1
(-0.2) 		112
(-0.1) 		183.8
(3) 		141
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 34.4
(3)
P 		14
(-3)
A 		14.6
(-2.8)
A 		23.6
(-0.2)
P 		20
B 18.9
(-3)
A 		32
(3)
P 		20.9
(-2.1)
P 		31.5
(2.8)
P 		13
C 41.3
(0.5)
P 		53.7
(3)
M 		24.2
(-3)
P 		25.6
(-2.7)
P 		30
avr 31.5
(2.2) 		33.2
(3) 		19.9
(-3) 		26.9
(0.2) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 2.3
(-3)
A 		19.1
(-0.3)
A 		20.2
(-0.1)
P 		18.1
(-0.5)
M 		38.6
(2.8)
P 		39.9
(3)
P 		38
B 18.9
(-3)
P 		27.8
(-2)
A 		20.8
(-2.8)
P 		27.7
(-2)
P 		42.8
(-0.2)
P 		71
(3)
P 		52
C 22.6
(-2.1)
P 		23.2
(-2)
M 		15.1
(-3)
P 		30.4
(-1.2)
P 		33.3
(-0.9)
P 		66
(3)
P 		51
avr 14.6
(-3) 		23.4
(-1.8) 		18.7
(-2.4) 		25.4
(-1.5) 		38.2
(0.2) 		59
(3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183611_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2252
Sequence Type Exemplar sequence
Representative Public ID C06A5.4 NCBI
Target Description C06A5.4 /REP_DB=WormBase Gene ID /WP=CE07951 /TR=O01474 /GB=AAB52438.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059326(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059326 NCBI Caenorhabditis elegans C06A5.4 (C06A5.4) mRNA, complete cds. 11/11 A 
SNAP00000012783 ENSEMBL cdna:SNAP chromosome:CEL140:I:5988926:5989723:-1 11/11 None
C06A5.4 ENSEMBL cdna:known chromosome:CEL140:I:5988926:5989723:-1 gene:C06A5.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000012794 8/11 Cross Hyb Matching Probes None
SNAP00000037068 5/11 Cross Hyb Matching Probes None
GENEFINDER00000037074 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl C06A5.4
Entrez Gene 182282 Entrez gene
SwissProt O01474 EMBL-EBI
WormBase CE07951 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52438 Hypothetical protein C06A5.4 [Caenorhabditis elegans] ref|NP_491727.1| C06A5.4 [Caenorhabditis elegans] 1.0E-125
blast NP_494515 F14D2.9 [Caenorhabditis elegans] gb|AAB94964.2| Hypothetical protein F14D2.9 [Caenorhabditis elegans] 8.0E-73
Sequence
Target Sequence 
>C. ELEGANS:183611_AT
gttctcgagtcaccgggaagggaagaactcagaaagctattgctttctgattatgaggat
gtaggatcagttacgatagatacgccaaagctaaaaaatcggaatgttcgccttcgtgga
gcaggtcggccacagaaaggtggcgatgattataaagattatggaagaagcgaaatggaa
cagtttcttcgtcttgtctcggacaagccttttctgtggcacacaaaagattcggatttt
cacagaaaaaaagagaaagggatgcctgcgtgggccgaaatcgagaggacttgcaatacg
tttatgggaaaaggaagaactccaggaaaaactgctgctgctcttttcaaaaaaatggct
acaacctacaaatctcatttgacacgaatccaaaaggctccatcaggatccgccgtgaca
ccaaagaaagatctgttctgttatgccgagttgatgtcctttatggatgaagatatcact
cacagagcaccaacatgttcctttatcgtcggagccggacctgatgttgatgttcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCTCGAGTCACCGGGAAGGGAAG 679 441 106 Antisense
ATGGAACAGTTTCTTCGTCTTGTCT 27 53 280 Antisense
ACTGCTGCTGCTCTTTTCAAAAAAA 199 99 436 Antisense
AAATGGCTACAACCTACAAATCTCA 317 119 458 Antisense
CAAAAGGCTCCATCAGGATCCGCCG 254 191 496 Antisense
AAGATCTGTTCTGTTATGCCGAGTT 628 155 533 Antisense
ATGCCGAGTTGATGTCCTTTATGGA 626 41 548 Antisense
AGATATCACTCACAGAGCACCAACA 172 67 576 Antisense
AGCACCAACATGTTCCTTTATCGTC 384 77 591 Antisense
CTTTATCGTCGGAGCCGGACCTGAT 4 223 606 Antisense
GCCGGACCTGATGTTGATGTTCTTC 700 283 619 Antisense
Sequence Source Affymetrix Proprietary Database