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[183610_at]

Description W06D12.1 /REP_DB=WormBase Gene ID /WP=CE16549 /TR=O45890 /GB=CAB04922.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 28      4grp_total > 07      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 7.1
(-2.7)
A 		6.5
(-3)
A 		19.4
(3)
A 		7.1
(-2.7)
A 		13
B 21.4
(3)
A 		4.1
(-2.5)
A 		3.8
(-2.6)
A 		2.5
(-3)
A 		19
C 7.3
(-2.3)
A 		4.3
(-3)
A 		6.4
(-2.5)
A 		29.4
(3)
A 		25
avr 11.9
(2.2) 		5
(-3) 		9.9
(0.7) 		13
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 77.5
(3)
A 		2.7
(-3)
A 		7.6
(-2.6)
A 		3.2
(-3)
A 		7.5
(-2.6)
A 		7.5
(-2.6)
A 		75
B 3.8
(-3)
A 		6.8
(-2.2)
A 		5.9
(-2.4)
A 		7.9
(-1.9)
A 		26.6
(3)
A 		25.1
(2.6)
A 		23
C 2.5
(-3)
A 		23.3
(3)
A 		2.9
(-2.9)
A 		7.5
(-1.6)
A 		9.8
(-0.9)
A 		10.4
(-0.7)
A 		21
avr 27.9
(3) 		10.9
(-1.6) 		5.5
(-3) 		6.2
(-2.8) 		14.6
(-0.6) 		14.3
(-0.6) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2.6
(-0.7)
A 		1.4
(-2.4)
A 		5.1
(3)
A 		1
(-3)
A 		4
B 6.8
(3)
A 		1
(-2.5)
A 		0.9
(-2.6)
A 		0.5
(-3)
A 		6
C 2.4
(-1.1)
A 		1.2
(-3)
A 		2.2
(-1.4)
A 		4.9
(3)
A 		4
avr 3.9
(3) 		1.2
(-3) 		2.7
(0.3) 		2.1
(-1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 14.3
(3)
A 		1
(-2.9)
A 		1.6
(-2.6)
A 		0.8
(-3)
A 		2.3
(-2.3)
A 		1.8
(-2.6)
A 		14
B 1.3
(-3)
A 		2.3
(-2.4)
A 		1.4
(-2.9)
A 		2.1
(-2.5)
A 		10.8
(3)
A 		9.4
(2.1)
A 		10
C 0.9
(-2.9)
A 		7.1
(3)
A 		0.8
(-3)
A 		1.5
(-2.3)
A 		3.2
(-0.7)
A 		3.5
(-0.4)
A 		6
avr 5.5
(3) 		3.5
(0.1) 		1.3
(-3) 		1.5
(-2.7) 		5.4
(2.9) 		4.9
(2.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183610_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13941
Sequence Type Exemplar sequence
Representative Public ID W06D12.1 NCBI
Target Description W06D12.1 /REP_DB=WormBase Gene ID /WP=CE16549 /TR=O45890 /GB=CAB04922.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075083(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075083 NCBI Caenorhabditis elegans W06D12.1 (W06D12.1) mRNA, complete cds. 11/11 None
GENEFINDER00000010719 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17736184:17738296:-1 11/11 None
W06D12.1 ENSEMBL cdna:known chromosome:CEL140:V:17736183:17738296:-1 gene:W06D12.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010711 7/11 Cross Hyb Matching Probes None
SNAP00000010712 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17736151-17738296(-) 97.78 100.0
Public Domain and Genome References
Gene Title
Ensembl W06D12.1
Entrez Gene 189246 Entrez gene
SwissProt O45890 EMBL-EBI
WormBase CE36721 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04922 Hypothetical protein W06D12.1 [Caenorhabditis elegans] ref|NP_507484.2| W06D12.1 [Caenorhabditis elegans] 1.0E-168
blast CAB04922 Hypothetical protein W06D12.1 [Caenorhabditis elegans] ref|NP_507484.2| W06D12.1 [Caenorhabditis elegans] 1.0E-158
blast CAE56817 Hypothetical protein CBG24630 [Caenorhabditis briggsae] 1.0E-113
blast CAA89068 Hypothetical protein R07E3.3 [Caenorhabditis elegans] ref|NP_509734.1| R07E3.3 [Caenorhabditis elegans] 3.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 5.1E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507484.2 1 283-305
W06D12.1 1 283-305
GENEFINDER00000010719 1 282-304
Sequence
Target Sequence 
>C. ELEGANS:183610_AT
tttgcaagaaccttccttcatcgaaaatgcagaatttggatgtgatgacagatcggaagg
tttccgatgatatcccgccaggcttcccaagaccacaaaacaatactaaactgcagaaat
cccaaaaattttccaccgacgccatgacctcaaactccgactacagtgccgacttcctag
atgacgagctggaggacgaggtggacaagatgagccggattccatcggtcacaatgaatc
gtctgatccgccgagacgtcgcggggggcaacaccaaacttttggcggatgtcgacgtgg
cagctccttctgtaaatgttcaggatcttcctgagtctgaagttggaaatcctactggaa
atcgtaaatttcacgtgccaacaaatgcctcgaacgacgtgtgtttcacaaggaccaacc
tcattctgagcctactgattttggcggctcttggcatagttacaatatcgctgatgtacc
tgagtctgcaagtcggaaaaccaaaaaactaccgctcccggacttttcgcgatgagcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGCAAGAACCTTCCTTCATCGAA 95 669 437 Antisense
GGAAGGTTTCCGATGATATCCCGCC 516 525 491 Antisense
GCCGACTTCCTAGATGACGAGCTGG 471 285 604 Antisense
ATGAGCCGGATTCCATCGGTCACAA 541 45 646 Antisense
TTTTGGCGGATGTCGACGTGGCAGC 467 669 716 Antisense
GGCAGCTCCTTCTGTAAATGTTCAG 97 537 735 Antisense
ATGCCTCGAACGACGTGTGTTTCAC 571 39 821 Antisense
ACAAGGACCAACCTCATTCTGAGCC 371 113 844 Antisense
CCTACTGATTTTGGCGGCTCTTGGC 490 267 867 Antisense
ATCGCTGATGTACCTGAGTCTGCAA 536 37 903 Antisense
TCCCGGACTTTTCGCGATGAGCAAT 12 597 952 Antisense
Sequence Source Affymetrix Proprietary Database