[Home] | [Total List]

[183609_at]

Description C06E4.5 /REP_DB=WormBase Gene ID /WP=CE03953 /TR=Q17723 /GB=AAA82472.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 30      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 67.2
(3)
A 		6.3
(-2.9)
A 		5.6
(-3)
A 		15.1
(-2.1)
A 		62
B 4.2
(-3)
A 		9.7
(2.4)
A 		10.3
(3)
A 		5.9
(-1.3)
A 		6
C 4.7
(-3)
A 		21.2
(-0.3)
A 		8
(-2.5)
A 		40.9
(3)
A 		36
avr 25.4
(3) 		12.4
(-1.5) 		8
(-3) 		20.6
(1.3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 7.9
(-1.6)
A 		5.1
(-2.5)
A 		3.4
(-3)
A 		8.7
(-1.3)
A 		19.9
(2.3)
A 		22.2
(3)
A 		19
B 16.6
(-2.4)
A 		72.6
(3)
A 		38.6
(-0.3)
A 		10.9
(-3)
A 		35.5
(-0.6)
A 		30.3
(-1.1)
A 		62
C 7.4
(-2.8)
A 		76.2
(3)
A 		11.1
(-2.5)
A 		10.9
(-2.5)
A 		5.5
(-3)
A 		5.7
(-3)
A 		71
avr 10.6
(-2.9) 		51.3
(3) 		17.7
(-1.9) 		10.2
(-3) 		20.3
(-1.5) 		19.4
(-1.7) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 24.5
(3)
A 		1.4
(-3)
A 		1.5
(-3)
A 		2.2
(-2.8)
A 		23
B 1.4
(-2.5)
A 		2.4
(3)
A 		2.4
(3)
A 		1.3
(-3)
A 		1
C 1.6
(-3)
A 		6.1
(2.1)
A 		2.8
(-1.6)
A 		6.9
(3)
A 		5
avr 9.2
(3) 		3.3
(-2.1) 		2.2
(-3) 		3.5
(-1.9) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 1.5
(-2.1)
A 		1.8
(-1.8)
A 		0.7
(-3)
A 		2.2
(-1.3)
A 		6
(3)
A 		5.4
(2.3)
A 		5
B 5.8
(-2.2)
A 		24.2
(3)
A 		9.4
(-1.2)
A 		2.9
(-3)
A 		14.4
(0.2)
A 		11.3
(-0.6)
A 		21
C 2.7
(-2.7)
A 		23.3
(3)
A 		2.8
(-2.7)
A 		2.2
(-2.9)
A 		1.8
(-3)
A 		1.9
(-3)
A 		22
avr 3.3
(-2.6) 		16.4
(3) 		4.3
(-2.2) 		2.4
(-3) 		7.4
(-0.9) 		6.2
(-1.4) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183609_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9047
Sequence Type Exemplar sequence
Representative Public ID C06E4.5 NCBI
Target Description C06E4.5 /REP_DB=WormBase Gene ID /WP=CE03953 /TR=Q17723 /GB=AAA82472.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068752(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068752 NCBI Caenorhabditis elegans C06E4.5 (C06E4.5) mRNA, complete cds. 11/11 None
C06E4.5 ENSEMBL cdna:known chromosome:CEL140:IV:7254974:7256248:1 gene:C06E4.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041903 7/11 Cross Hyb Matching Probes None
GENEFINDER00000041915 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7254979-7256254(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06E4.5
Entrez Gene 182328 Entrez gene
SwissProt Q17723 EMBL-EBI
WormBase CE03953 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82472 Hypothetical protein C06E4.5 [Caenorhabditis elegans] ref|NP_501153.1| C06E4.5 [Caenorhabditis elegans] 1.0E-134
blast CAB54446 Hypothetical protein Y48B6A.10 [Caenorhabditis elegans] ref|NP_496965.1| Y48B6A.10 [Caenorhabditis elegans] 3.0E-11
blast AAF39881 Hypothetical protein H12I13.1 [Caenorhabditis elegans] ref|NP_495212.1| H12I13.1 [Caenorhabditis elegans] 7.0E-11
Sequence
Target Sequence 
>C. ELEGANS:183609_AT
tctgccttcctgatgatactgatggaactcggaggatcaccactttctgcaaagcctgat
aactcccttcatgctcatcaatcaataagaatcatgaaacaagttattttttggttgttt
gtcgccaattcaaagttcaagttcgcccatcaagacttgcactgtggaaatgttttgatt
ggaaaaacaaaggacgttttattgcaatacagcatcggtcaaaagaacatttcaataaac
tcgaaaggaattttggttaaagtgtgcgactactcggagagcgttatagatggatcagct
gatgacgtcaaagatcaaatccctgatttcgaaaaagagcttctgaagaagacacgcgac
tccgacagaaaggtggtcgaagatttgttcaaagggatgagtgatgcaaaaagcttccga
acgcttctcaaaattccactactcagtgggaatgatatcgattgccactgttttataatg
ttttcgaaattcggacttccagatgtggtcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGCCTTCCTGATGATACTGATGG 60 611 109 Antisense
GATGGAACTCGGAGGATCACCACTT 386 407 129 Antisense
ATCACCACTTTCTGCAAAGCCTGAT 364 29 144 Antisense
TCTGCAAAGCCTGATAACTCCCTTC 108 609 154 Antisense
GGTTGTTTGTCGCCAATTCAAAGTT 488 505 221 Antisense
AGTTCGCCCATCAAGACTTGCACTG 223 65 248 Antisense
AAGTGTGCGACTACTCGGAGAGCGT 163 159 368 Antisense
AGACACGCGACTCCGACAGAAAGGT 217 71 458 Antisense
GGGAATGATATCGATTGCCACTGTT 678 493 556 Antisense
GCCACTGTTTTATAATGTTTTCGAA 185 279 572 Antisense
AATTCGGACTTCCAGATGTGGTCGA 276 175 596 Antisense
Sequence Source Affymetrix Proprietary Database