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[183608_at]

Description F44A2.3 /REP_DB=WormBase Gene ID /WP=CE27383 /TR=Q20380 /GB=AAA83446.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 52      4grp_highest_8_8 > 59      4grp_high_8_8 > 33      6grp_highest_nonorm > 42      6grp_total > 62      4grp_total > 47      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 355
1 2 3 4 range
A 694
(3)
P 		578.1
(0.9)
P 		425.5
(-1.8)
P 		358.9
(-3)
P 		335
B 706.4
(3)
P 		449.6
(-2.3)
P 		413.5
(-3)
P 		483
(-1.6)
P 		293
C 713.9
(3)
P 		404.7
(-3)
P 		447.3
(-2.2)
P 		566.3
(0.1)
P 		309
avr 704.8
(3) 		477.5
(-1.9) 		428.8
(-3) 		469.4
(-2.1) 		276

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 628
1 2 3 4 5 6 range
A 703.6
(-2.8)
P 		921.7
(0.5)
P 		1082.8
(3)
P 		1042.4
(2.4)
P 		810.6
(-1.1)
P 		688.6
(-3)
P 		394
B 738.7
(-2.8)
P 		1062.2
(1.8)
P 		1146.1
(3)
P 		980.4
(0.7)
P 		737.2
(-2.8)
P 		721.6
(-3)
P 		425
C 649.1
(-3)
P 		1039.7
(0.7)
P 		1277
(3)
P 		994.2
(0.3)
P 		660.5
(-2.9)
P 		742.6
(-2.1)
P 		628
avr 697.1
(-3) 		1007.9
(1) 		1168.6
(3) 		1005.7
(0.9) 		736.1
(-2.5) 		717.6
(-2.7) 		472
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 200
1 2 3 4 range
A 252.7
(3)
P 		125.5
(-0.8)
P 		111.2
(-1.2)
P 		52.5
(-3)
P 		200
B 225.3
(3)
P 		111
(-2.3)
P 		95.8
(-3)
P 		102.9
(-2.7)
P 		130
C 236.3
(3)
P 		116.3
(-2.1)
P 		155.9
(-0.4)
P 		95.5
(-3)
P 		141
avr 238.1
(3) 		117.6
(-1.7) 		121
(-1.5) 		83.6
(-3) 		155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 224
1 2 3 4 5 6 range
A 129.7
(-3)
P 		327.8
(3)
P 		235.8
(0.2)
P 		264.4
(1.1)
P 		244.6
(0.5)
P 		167.7
(-1.8)
P 		198
B 257
(-3)
P 		353.6
(3)
P 		278.3
(-1.7)
P 		259.7
(-2.8)
P 		299.5
(-0.4)
P 		269.1
(-2.2)
P 		97
C 240.6
(-1)
P 		317.2
(2.6)
P 		325
(3)
P 		199.9
(-3)
P 		213.7
(-2.3)
P 		248.6
(-0.7)
P 		125
avr 209.1
(-3) 		332.9
(3) 		279.7
(0.4) 		241.3
(-1.4) 		252.6
(-0.9) 		228.5
(-2.1) 		124
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183608_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11372
Sequence Type Exemplar sequence
Representative Public ID F44A2.3 NCBI
Target Description F44A2.3 /REP_DB=WormBase Gene ID /WP=CE27383 /TR=Q20380 /GB=AAA83446.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073005(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073005 NCBI Caenorhabditis elegans F44A2.3 (F44A2.3) mRNA, complete cds. 11/11 None
SNAP00000038852 ENSEMBL cdna:SNAP chromosome:CEL140:V:9310852:9313303:1 11/11 None
GENEFINDER00000038862 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9309476:9315288:1 10/11 None
F44A2.3 ENSEMBL cdna:known chromosome:CEL140:V:9308046:9313475:1 gene:F44A2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9309404-9313303(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F44A2.3
Entrez Gene 179311 Entrez gene
SwissProt Q20380 EMBL-EBI
WormBase CE36849 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8289 lipid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA83446 Hypothetical protein F44A2.3 [Caenorhabditis elegans] ref|NP_505406.2| F44A2.3 [Caenorhabditis elegans] 0.0
blast CAE72150 Hypothetical protein CBG19248 [Caenorhabditis briggsae] 0.0
blast CAE72150 Hypothetical protein CBG19248 [Caenorhabditis briggsae] 1.0E-116
blast AAA50642 Hypothetical protein C06E8.5 [Caenorhabditis elegans] ref|NP_498530.1| C06E8.5 [Caenorhabditis elegans] 1.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR001124 EMBL-EBI Lipid-binding serum glycoprotein 9.7E-11
Pfam IPR001124 EMBL-EBI Lipid-binding serum glycoprotein 2.4E-10
Sequence
Target Sequence 
>C. ELEGANS:183608_AT
gttgttgtttctcaatattctctcaatagtttgctcttccaagctcacaggaccaattca
ttgattttccacattgattctaaaactccgggtgttggaaatttactaaaaacatcatgc
acattagatgaagtttgtattgcagatgaaatcccaaaggttgagtactatgtgatgacg
atttcaatgaatggtcgctgtatatttttccttgaaggaacacgacaaaaaattggtgta
attccatttaatactgttgttcagatcaacatgaaaaccacagttggaaagcttattgga
acagttaccatacaatcccttgattttatacaaggaattgattttctgggaatgtctgtt
tctgatttagatggattaagaagaacaacaaaaagtgcacttcaaaattttgccagctct
gcaactgcaaatgggttcacactttcaactgcatcaatgcactcccctcttcgtttgtcc
catccagaagtctcacttcttccaaatgctctgcttctgcaagctgatgtggatcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGTTGTTTCTCAATATTCTCTCA 33 439 1027 Antisense
AATAGTTTGCTCTTCCAAGCTCACA 236 173 1051 Antisense
CAAGCTCACAGGACCAATTCATTGA 534 185 1066 Antisense
ATGGTCGCTGTATATTTTTCCTTGA 102 51 1217 Antisense
GAACAGTTACCATACAATCCCTTGA 112 351 1325 Antisense
GTGCACTTCAAAATTTTGCCAGCTC 219 481 1421 Antisense
ATGGGTTCACACTTTCAACTGCATC 135 51 1457 Antisense
TTCAACTGCATCAATGCACTCCCCT 506 685 1470 Antisense
TCTTCGTTTGTCCCATCCAGAAGTC 25 617 1494 Antisense
TTCTTCCAAATGCTCTGCTTCTGCA 196 689 1523 Antisense
GCTTCTGCAAGCTGATGTGGATCTA 33 307 1539 Antisense
Sequence Source Affymetrix Proprietary Database