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[183607_at]

Description C29F9.5 /REP_DB=WormBase Gene ID /WP=CE08453 /TR=Q9TZB8 /GB=AAC68747.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 08      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 11.8
(-3)
A 		19.9
(-2.6)
A 		19.6
(-2.6)
A 		136.1
(3)
A 		124
B 3.9
(-3)
A 		13.4
(-1.4)
A 		40.2
(3)
A 		20.3
(-0.3)
A 		36
C 11.6
(-3)
A 		12.8
(-2.4)
A 		24.4
(3)
A 		21.9
(1.8)
A 		13
avr 9.1
(-3) 		15.4
(-2.2) 		28.1
(-0.7) 		59.4
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 46.2
(3)
A 		9.3
(-2.4)
A 		9.9
(-2.3)
A 		5
(-3)
A 		14.5
(-1.6)
A 		20.4
(-0.8)
A 		41
B 6.2
(-2.8)
A 		5.4
(-3)
A 		34.5
(3)
A 		23.6
(0.8)
A 		11.6
(-1.7)
A 		10.4
(-2)
A 		29
C 6.1
(-3)
A 		12.1
(-2.4)
A 		11.2
(-2.5)
A 		70.3
(3)
A 		11.8
(-2.5)
A 		9.5
(-2.7)
A 		64
avr 19.5
(-0.4) 		8.9
(-3) 		18.5
(-0.6) 		33
(3) 		12.6
(-2.1) 		13.4
(-1.9) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 4.3
(-3)
A 		4.3
(-3)
A 		5.1
(-2.7)
A 		19.9
(3)
A 		16
B 1.2
(-3)
A 		3.3
(-1.4)
A 		9.3
(3)
A 		4.3
(-0.7)
A 		8
C 3.8
(-2.9)
A 		3.7
(-3)
A 		8.5
(3)
A 		3.7
(-3)
A 		5
avr 3.1
(-3) 		3.8
(-2.3) 		7.6
(1.4) 		9.3
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 8.5
(3)
A 		3.3
(-1.3)
A 		2.2
(-2.3)
A 		1.3
(-3)
A 		4.4
(-0.4)
A 		5
(0.1)
A 		7
B 2.2
(-2.6)
A 		1.8
(-3)
A 		8.4
(3)
A 		6.2
(1)
A 		4.7
(-0.4)
A 		3.9
(-1.1)
A 		7
C 2.3
(-3)
A 		3.7
(-2.3)
A 		2.8
(-2.7)
A 		14.1
(3)
A 		3.8
(-2.2)
A 		3.2
(-2.5)
A 		12
avr 4.3
(-1) 		2.9
(-3) 		4.5
(-0.8) 		7.2
(3) 		4.3
(-1) 		4
(-1.5) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183607_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8330
Sequence Type Exemplar sequence
Representative Public ID C29F9.5 NCBI
Target Description C29F9.5 /REP_DB=WormBase Gene ID /WP=CE08453 /TR=Q9TZB8 /GB=AAC68747.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064744(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064744 NCBI Caenorhabditis elegans C29F9.5 (C29F9.5) mRNA, complete cds. 11/11 None
SNAP00000042030 ENSEMBL cdna:SNAP chromosome:CEL140:III:117555:118766:1 11/11 None
GENEFINDER00000042034 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:117555:118766:1 11/11 None
C29F9.5 ENSEMBL cdna:known chromosome:CEL140:III:117706:118766:1 gene:C29F9.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:117705-118766(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C29F9.5
Entrez Gene 183022 Entrez gene
SwissProt Q9TZB8 EMBL-EBI
WormBase CE08453 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3712 transcription cofactor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC68747 Hypothetical protein C29F9.5 [Caenorhabditis elegans] ref|NP_497145.1| C29F9.5 [Caenorhabditis elegans] 1.0E-121
blast AAC68747 Hypothetical protein C29F9.5 [Caenorhabditis elegans] ref|NP_497145.1| C29F9.5 [Caenorhabditis elegans] 1.0E-117
blast CAA82665 Hypothetical protein K03H1.10 [Caenorhabditis elegans] emb|CAA82940.1| Hypothetical protein K03H1.10 [Caenorhabditis elegans] ref|NP_499201.1| K03H1.10 [Caenorhabditis elegans] 7.0E-33
blast CAA82353 Hypothetical protein R10E11.1a [Caenorhabditis elegans] ref|NP_499161.1| R10E11.1a [Caenorhabditis elegans] 7.0E-33
blast CAA82665 Hypothetical protein K03H1.10 [Caenorhabditis elegans] emb|CAA82940.1| Hypothetical protein K03H1.10 [Caenorhabditis elegans] ref|NP_499201.1| K03H1.10 [Caenorhabditis elegans] 4.0E-31
blast CAA82665 Hypothetical protein K03H1.10 [Caenorhabditis elegans] emb|CAA82940.1| Hypothetical protein K03H1.10 [Caenorhabditis elegans] ref|NP_499201.1| K03H1.10 [Caenorhabditis elegans] 6.0E-31
blast BAA23766.1 unnamed protein product [Caenorhabditis elegans] 9.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR000197 EMBL-EBI TAZ finger 1.4E-31
Pfam IPR000197 EMBL-EBI TAZ finger 1.4E-31
Sequence
Target Sequence 
>C. ELEGANS:183607_AT
cgagaagaacgagccggctcctcatgcaatgtgtaagattcaggattgtgtgatcatgaa
ggaggtgctgaagcatatgacgtcgtgcaaggaaggacccaagtgtaactcggtccactg
tgcttcctcccgcaccatcctcagccattggaagaaatgcttcaacgaggaatgcccagt
ttgcaagccgattattgagcagcggactgctcctcctcaggacaccacccctgcggagcc
caaaaaaccagaacacgaccagatctggcacctggaagtccccaaaacctaccgaagcga
actcatcgagaagatctacaagggaatcatgtccaatgtgaagccgggtaccctgtccga
ggcccaaatggatacctggaaggagtactcgagatctgcggagcttcagatcttcgatac
cgcccaaaagctggaagcgtactaccatatggctagagagaaggtttgccgctaccagga
aggatttccaagacgtcagaagacggaggagaaggatgaaagtgatggttcagagaagga
ggatgaggctgacgatcgcttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAGAAGAACGAGCCGGCTCCTCAT 209 251 99 Antisense
AAGTGTAACTCGGTCCACTGTGCTT 509 159 199 Antisense
GCACCATCCTCAGCCATTGGAAGAA 356 315 230 Antisense
GGAATGCCCAGTTTGCAAGCCGATT 298 533 267 Antisense
AACACGACCAGATCTGGCACCTGGA 64 135 350 Antisense
TCCAATGTGAAGCCGGGTACCCTGT 136 587 430 Antisense
GTCCGAGGCCCAAATGGATACCTGG 688 475 453 Antisense
GAGTACTCGAGATCTGCGGAGCTTC 273 399 481 Antisense
CGGAGCTTCAGATCTTCGATACCGC 218 243 497 Antisense
GTTTGCCGCTACCAGGAAGGATTTC 268 447 562 Antisense
GAGGATGAGGCTGACGATCGCTTGG 32 405 637 Antisense
Sequence Source Affymetrix Proprietary Database