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[183606_at]

Description F17E9.8 /REP_DB=WormBase Gene ID /WP=CE07074 /TR=O61519 /GB=AAC05108.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 38      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 55
(2.4)
A 		59.9
(3)
A 		9.1
(-3)
A 		56.3
(2.6)
A 		51
B 84.5
(3)
M 		21.1
(-2.7)
A 		17.3
(-3)
A 		20
(-2.8)
A 		67
C 60.7
(3)
A 		27.9
(-0.8)
A 		8.3
(-3)
A 		43
(1)
A 		52
avr 66.7
(3) 		36.3
(-0.3) 		11.6
(-3) 		39.8
(0.1) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 40.8
(1.2)
A 		52.2
(2.4)
A 		57.6
(3)
A 		39.1
(1)
A 		15.5
(-1.6)
A 		2.8
(-3)
A 		55
B 62
(3)
A 		61.9
(3)
A 		44.8
(1.2)
A 		44
(1.1)
A 		33.9
(0)
A 		5.2
(-3)
A 		57
C 58
(0.7)
A 		91.4
(3)
A 		25.9
(-1.5)
A 		40.3
(-0.5)
A 		25.9
(-1.5)
A 		3.9
(-3)
A 		88
avr 53.6
(1.6) 		68.5
(3) 		42.8
(0.6) 		41.1
(0.5) 		25.1
(-1) 		4
(-3) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 20
(3)
A 		13
(0.6)
A 		2.4
(-3)
A 		8.2
(-1)
A 		18
B 26.9
(3)
M 		5.2
(-2.7)
A 		4
(-3)
A 		4.3
(-2.9)
A 		23
C 20.1
(3)
A 		8
(-1.2)
A 		2.9
(-3)
A 		7.2
(-1.5)
A 		17
avr 22.3
(3) 		8.7
(-1.3) 		3.1
(-3) 		6.6
(-1.9) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 7.5
(-0.7)
A 		18.6
(3)
A 		12.5
(1)
A 		9.9
(0.1)
A 		4.7
(-1.7)
A 		0.7
(-3)
A 		18
B 21.6
(3)
A 		20.6
(2.7)
A 		10.9
(-0.3)
A 		11.7
(-0)
A 		13.8
(0.6)
A 		1.9
(-3)
A 		20
C 21.5
(1.6)
A 		27.9
(3)
A 		6.6
(-1.8)
A 		8.1
(-1.5)
A 		8.4
(-1.4)
A 		1.3
(-3)
A 		27
avr 16.9
(1.4) 		22.4
(3) 		10
(-0.5) 		9.9
(-0.6) 		9
(-0.8) 		1.3
(-3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183606_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10160
Sequence Type Exemplar sequence
Representative Public ID F17E9.8 NCBI
Target Description F17E9.8 /REP_DB=WormBase Gene ID /WP=CE07074 /TR=O61519 /GB=AAC05108.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069009(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069009 NCBI Caenorhabditis elegans F17E9.8 (F17E9.8) mRNA, complete cds. 11/11 None
GENEFINDER00000000502 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8339848:8346486:1 10/11 None
F17E9.8 ENSEMBL cdna:known chromosome:CEL140:IV:8340174:8342237:1 gene:F17E9.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000484 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8340179-8342243(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F17E9.8
Entrez Gene 184621 Entrez gene
SwissProt O61519 EMBL-EBI
WormBase CE07074 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
6811 ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
45211 postsynaptic membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5230 extracellular ligand-gated ion channel activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC05108 Hypothetical protein F17E9.8 [Caenorhabditis elegans] ref|NP_501410.1| F17E9.8 [Caenorhabditis elegans] 0.0
blast AAC05108 Hypothetical protein F17E9.8 [Caenorhabditis elegans] ref|NP_501410.1| F17E9.8 [Caenorhabditis elegans] 1.0E-178
blast AAC05109 Hypothetical protein F17E9.7 [Caenorhabditis elegans] ref|NP_501411.1| F17E9.7 [Caenorhabditis elegans] 1.0E-137
blast AAC05109 Hypothetical protein F17E9.7 [Caenorhabditis elegans] ref|NP_501411.1| F17E9.7 [Caenorhabditis elegans] 1.0E-109
blast AAC05107 Hypothetical protein F17E9.5 [Caenorhabditis elegans] ref|NP_501412.1| F17E9.5 [Caenorhabditis elegans] 8.0E-85
blast CAB16504 Hypothetical protein Y57G11C.2 [Caenorhabditis elegans] ref|NP_502777.2| Y57G11C.2 [Caenorhabditis elegans] 3.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR006202 EMBL-EBI Neurotransmitter-gated ion-channel ligand binding domain 8.1E-28
Pfam IPR006202 EMBL-EBI Neurotransmitter-gated ion-channel ligand binding domain 8.1E-28
Pfam IPR006202 EMBL-EBI Neurotransmitter-gated ion-channel ligand binding domain 8.7E-29
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501410.1 2 194-216,258-280
F17E9.8 2 194-216,258-280
GENEFINDER00000000502 8 261-283,296-315,325-347,637-659,701-723,803-825,835-854,879-901
Sequence
Target Sequence 
>C. ELEGANS:183606_AT
caatgatgctccaattggtttccgatatgatgcccaaggcttctcgtctcccattactcg
gaaattatattattgcggagatttttgttgtgacagcagcaacaattgcatcaattatta
tccaacaaacgcatcatcatgttcatacaagtgcaattcggccacggagatggttacgat
gtttagttctttgtgaatgcagaagaagaagattttctatatcagaagcaagtactgttt
ccagtgtagatgttccagagcacgcgattcaatcattctctattctcaagtcatcattac
atcaaacagcagttctagttcgtgatactctccaacggatgtctttaataagtgaaaacc
aattgctttggcttaaaattctcgacaaaactgatttaatgtgtctttttctgtttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATGATGCTCCAATTGGTTTCCGA 157 183 731 Antisense
ATATGATGCCCAAGGCTTCTCGTCT 441 21 755 Antisense
CTCGTCTCCCATTACTCGGAAATTA 241 231 773 Antisense
TATTATCCAACAAACGCATCATCAT 88 663 846 Antisense
AGTGCAATTCGGCCACGGAGATGGT 441 59 880 Antisense
GTTTCCAGTGTAGATGTTCCAGAGC 375 451 967 Antisense
GTTCCAGAGCACGCGATTCAATCAT 420 441 982 Antisense
CATTCTCTATTCTCAAGTCATCATT 294 217 1004 Antisense
GCAGTTCTAGTTCGTGATACTCTCC 157 313 1039 Antisense
GATACTCTCCAACGGATGTCTTTAA 196 423 1054 Antisense
GATTTAATGTGTCTTTTTCTGTTTC 169 429 1123 Antisense
Sequence Source Affymetrix Proprietary Database