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[183605_at]

Description F43E2.9 /REP_DB=WormBase Gene ID /WP=CE10350 /TR=O02087 /GB=AAC71126.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 37      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 50.6
(1.4)
A 		65.1
(3)
A 		9.8
(-3)
A 		43.8
(0.7)
A 		55
B 59.2
(3)
M 		29.8
(-1.6)
A 		22.3
(-2.7)
A 		20.6
(-3)
A 		39
C 60.8
(1.4)
M 		72.3
(3)
A 		28.8
(-3)
A 		45.7
(-0.7)
A 		44
avr 56.9
(3) 		55.7
(2.8) 		20.3
(-3) 		36.7
(-0.3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 13.2
(-2.2)
A 		50
(3)
A 		21.6
(-1)
A 		39.5
(1.5)
A 		7.9
(-3)
A 		22.5
(-0.9)
A 		42
B 30.2
(1.5)
A 		6.3
(-3)
A 		36.5
(2.7)
A 		10.3
(-2.2)
A 		10.1
(-2.3)
A 		38.1
(3)
P 		32
C 94.9
(3)
A 		7.1
(-3)
A 		8.3
(-2.9)
A 		36.2
(-1)
A 		57.4
(0.4)
A 		42.9
(-0.6)
A 		88
avr 46.1
(3) 		21.1
(-3) 		22.1
(-2.8) 		28.7
(-1.2) 		25.1
(-2) 		34.5
(0.2) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 18.4
(3)
A 		14.1
(1.4)
A 		2.6
(-3)
A 		6.4
(-1.6)
A 		16
B 18.9
(3)
M 		7.4
(-1.8)
A 		5.2
(-2.7)
A 		4.4
(-3)
A 		15
C 20.1
(2.7)
M 		20.8
(3)
A 		10.1
(-1.9)
A 		7.7
(-3)
A 		13
avr 19.1
(3) 		14.1
(0.7) 		6
(-3) 		6.2
(-2.9) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 2.4
(-3)
A 		17.8
(3)
A 		4.7
(-2.1)
A 		10
(-0)
A 		2.4
(-3)
A 		5.5
(-1.8)
A 		15
B 10.5
(1.2)
A 		2.1
(-3)
A 		8.9
(0.4)
A 		2.7
(-2.7)
A 		4.1
(-2)
A 		14.2
(3)
P 		12
C 35.2
(3)
A 		2.2
(-3)
A 		2.1
(-3)
A 		7.3
(-2.1)
A 		18.6
(-0)
A 		14.4
(-0.8)
A 		33
avr 16
(3) 		7.4
(-1.8) 		5.2
(-3) 		6.7
(-2.2) 		8.4
(-1.2) 		11.4
(0.4) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183605_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4528
Sequence Type Exemplar sequence
Representative Public ID F43E2.9 NCBI
Target Description F43E2.9 /REP_DB=WormBase Gene ID /WP=CE10350 /TR=O02087 /GB=AAC71126.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063137(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063137 NCBI Caenorhabditis elegans F43E2.9 (F43E2.9) mRNA, complete cds. 11/11 None
SNAP00000044489 ENSEMBL cdna:SNAP chromosome:CEL140:II:7358842:7359301:1 11/11 None
GENEFINDER00000044499 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7358842:7363092:1 11/11 None
F43E2.9 ENSEMBL cdna:known chromosome:CEL140:II:7358842:7359301:1 gene:F43E2.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7358838-7359298(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F43E2.9
Entrez Gene 185710 Entrez gene
SwissProt O02087 EMBL-EBI
WormBase CE10350 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC71125 Hypothetical protein F43E2.3 [Caenorhabditis elegans] ref|NP_495539.2| F43E2.3 [Caenorhabditis elegans] 0.0
blast CAE67602 Hypothetical protein CBG13147 [Caenorhabditis briggsae] 0.0
blast AAC71126 Hypothetical protein F43E2.9 [Caenorhabditis elegans] ref|NP_495538.1| F43E2.9 [Caenorhabditis elegans] 1.0E-41
blast AAC71126 Hypothetical protein F43E2.9 [Caenorhabditis elegans] ref|NP_495538.1| F43E2.9 [Caenorhabditis elegans] 7.0E-40
blast CAE67601 Hypothetical protein CBG13146 [Caenorhabditis briggsae] 8.0E-38
Sequence
Target Sequence 
>C. ELEGANS:183605_AT
cccgattggcccgattctgggattccctggaaaacgagaatttattcgatatagttccac
aacctccaaagtctactgtaacccggtttcatcagcaatggctctcaagtttggcaaatg
cccgagacgacgagctccaaacaattttatatgcaaaaccattgcttccaactccggaat
ctatcgtacaattacccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCGATTGGCCCGATTCTGGGATTC 539 257 17 Antisense
GCCCGATTCTGGGATTCCCTGGAAA 262 287 25 Antisense
GAGAATTTATTCGATATAGTTCCAC 587 389 52 Antisense
AGTCTACTGTAACCCGGTTTCATCA 523 59 86 Antisense
CCCGGTTTCATCAGCAATGGCTCTC 583 259 98 Antisense
GCAATGGCTCTCAAGTTTGGCAAAT 602 321 111 Antisense
TTGGCAAATGCCCGAGACGACGAGC 145 701 127 Antisense
GACGACGAGCTCCAAACAATTTTAT 575 379 142 Antisense
TATGCAAAACCATTGCTTCCAACTC 75 657 166 Antisense
ATTGCTTCCAACTCCGGAATCTATC 183 3 177 Antisense
CCGGAATCTATCGTACAATTACCCG 237 265 190 Antisense
Sequence Source Affymetrix Proprietary Database