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[183604_at]

Description T08A11.2 /REP_DB=WormBase Gene ID /WP=CE03641 /TR=Q21909 /GB=CAA90775.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 46      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 73      6grp_total > 46      4grp_total > 61      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 487
1 2 3 4 range
A 775.1
(3)
P 		591.1
(0.4)
P 		605.3
(0.6)
P 		343.2
(-3)
P 		432
B 766.4
(3)
P 		591.9
(0.6)
P 		639.3
(1.3)
P 		330.5
(-3)
P 		436
C 705.7
(3)
P 		543.5
(0.7)
P 		668.9
(2.5)
P 		288.1
(-3)
P 		418
avr 749.1
(3) 		575.5
(0.6) 		637.8
(1.4) 		320.6
(-3) 		429

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 424
1 2 3 4 5 6 range
A 435.3
(-2)
P 		719.4
(3)
P 		380.3
(-3)
P 		476.4
(-1.3)
P 		450.8
(-1.8)
P 		696.5
(2.6)
P 		339
B 491.2
(0.9)
P 		568.3
(3)
P 		449.3
(-0.2)
P 		418
(-1)
P 		344.7
(-3)
P 		565.5
(2.9)
P 		224
C 768.4
(3)
P 		582.3
(-0.3)
P 		717.4
(2.1)
P 		429.5
(-3)
P 		508.5
(-1.6)
P 		585.4
(-0.2)
P 		339
avr 565
(1.1) 		623.3
(3) 		515.7
(-0.4) 		441.3
(-2.8) 		434.7
(-3) 		615.8
(2.8) 		189
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 234
1 2 3 4 range
A 282.2
(3)
P 		128.3
(-1)
P 		158.2
(-0.2)
P 		50.2
(-3)
P 		232
B 244.4
(3)
P 		146.2
(-0.4)
P 		148.2
(-0.3)
P 		70.4
(-3)
P 		174
C 233.6
(3)
P 		156.2
(0.5)
P 		233.1
(3)
P 		48.6
(-3)
P 		185
avr 253.4
(3) 		143.6
(-0.3) 		179.8
(0.8) 		56.4
(-3) 		197

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 205
1 2 3 4 5 6 range
A 80.2
(-3)
P 		255.8
(3)
P 		82.8
(-2.9)
P 		120.8
(-1.6)
P 		136
(-1.1)
P 		169.6
(0.1)
P 		176
B 170.9
(0.6)
P 		189.2
(1.7)
P 		109.1
(-3)
P 		110.7
(-2.9)
P 		140.1
(-1.2)
P 		210.9
(3)
P 		102
C 284.8
(3)
P 		177.7
(-0.2)
P 		182.6
(-0.1)
P 		86.4
(-3)
P 		164.6
(-0.6)
P 		196
(0.3)
P 		198
avr 178.6
(1.3) 		207.6
(3) 		124.8
(-1.9) 		106
(-3) 		146.9
(-0.6) 		192.2
(2.1) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183604_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6336
Sequence Type Exemplar sequence
Representative Public ID T08A11.2 NCBI
Target Description T08A11.2 /REP_DB=WormBase Gene ID /WP=CE03641 /TR=Q21909 /GB=CAA90775.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065452(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065452 NCBI Caenorhabditis elegans T08A11.2 (T08A11.2) mRNA, complete cds. 11/11 None
T08A11.2 ENSEMBL cdna:known chromosome:CEL140:III:4263769:4269240:-1 gene:T08A11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4264051-4269236(-) 99.65 100.0
Public Domain and Genome References
Gene Title
Ensembl T08A11.2
Entrez Gene 175549 Entrez gene
SwissProt Q21909 EMBL-EBI
WormBase CE03641 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:247271_AT splicing factor, putative at
CANINE_2:CFA.3435.1.S1_S_AT similar to splicing factor 3b, subunit 1 isoform 1 cfa
DROSOPHILA_2:1633234_AT dm
DROSGENOME1:145538_AT dm
CHICKEN:GGA.9919.1.S1_AT similar to pre-mRNA splicing factor SF3b 155 kDa subunit gga
HG-U133A:201070_X_AT splicing factor 3b, subunit 1, 155kDa hs
HG-U133_PLUS_2:201070_X_AT splicing factor 3b, subunit 1, 155kDa hs
HG-U133A_2:201070_X_AT splicing factor 3b, subunit 1, 155kDa hs
HG-U133A:201071_X_AT splicing factor 3b, subunit 1, 155kDa hs
HG-U133_PLUS_2:201071_X_AT splicing factor 3b, subunit 1, 155kDa hs
HG-U133A_2:201071_X_AT splicing factor 3b, subunit 1, 155kDa hs
HG-U133_PLUS_2:211185_S_AT splicing factor 3b, subunit 1, 155kDa hs
HG-U133A:211185_S_AT splicing factor 3b, subunit 1, 155kDa hs
HG-FOCUS:211185_S_AT splicing factor 3b, subunit 1, 155kDa hs
HG-U133A_2:211185_S_AT splicing factor 3b, subunit 1, 155kDa hs
HG-U133A_2:214305_S_AT splicing factor 3b, subunit 1, 155kDa hs
HG-U133_PLUS_2:214305_S_AT splicing factor 3b, subunit 1, 155kDa hs
HG-U133A:214305_S_AT splicing factor 3b, subunit 1, 155kDa hs
HU35KSUBA:RC_AA279420_AT splicing factor 3b, subunit 1, 155kDa hs
HU35KSUBC:RC_AA279071_AT splicing factor 3b, subunit 1, 155kDa hs
U133_X3P:G6912653_3P_A_AT splicing factor 3b, subunit 1, 155kDa hs
U133_X3P:HS.13453.3.A1_3P_A_AT splicing factor 3b, subunit 1, 155kDa hs
HG-U95AV2:39444_AT splicing factor 3b, subunit 1, 155kDa hs
HG-U133_PLUS_2:229303_AT Splicing factor 3b, subunit 1, 155kDa hs
HG-U133B:229303_AT Splicing factor 3b, subunit 1, 155kDa hs
HG-U95B:51004_AT Splicing factor 3b, subunit 1, 155kDa hs
HG-U95D:85475_AT Splicing factor 3b, subunit 1, 155kDa hs
HG-U95D:87538_AT Splicing factor 3b, subunit 1, 155kDa hs
HU35KSUBC:RC_H88207_AT Splicing factor 3b, subunit 1, 155kDa hs
U133_X3P:HS.41136.0.A1_3P_AT Splicing factor 3b, subunit 1, 155kDa hs
MOE430A:1418562_AT splicing factor 3b, subunit 1 mm
MOUSE430_2:1418562_AT splicing factor 3b, subunit 1 mm
MOUSE430A_2:1418562_AT splicing factor 3b, subunit 1 mm
MOE430A:1418561_AT splicing factor 3b, subunit 1 mm
MOUSE430_2:1418561_AT splicing factor 3b, subunit 1 mm
MOUSE430A_2:1418561_AT splicing factor 3b, subunit 1 mm
MOE430A:1449138_AT splicing factor 3b, subunit 1 mm
MOUSE430_2:1449138_AT splicing factor 3b, subunit 1 mm
MOUSE430A_2:1449138_AT splicing factor 3b, subunit 1 mm
MU11KSUBA:AA596555_S_AT splicing factor 3b, subunit 1 mm
MU11KSUBA:AA277153_S_AT splicing factor 3b, subunit 1 mm
MG-U74AV2:97808_AT splicing factor 3b, subunit 1 mm
MG-U74AV2:96777_AT splicing factor 3b, subunit 1 mm
MG-U74BV2:117211_AT splicing factor 3b, subunit 1 mm
MOE430B:1440818_S_AT splicing factor 3b, subunit 1 mm
MOUSE430_2:1440818_S_AT splicing factor 3b, subunit 1 mm
MU19KSUBA:TC21015_AT Splicing factor 3b, subunit 1 (Sf3b1), mRNA mm
MU19KSUBA:TC21651_AT Splicing factor 3b, subunit 1 (Sf3b1), mRNA mm
MU19KSUBB:TC29034_AT Splicing factor 3b, subunit 1 (Sf3b1), mRNA mm
MU19KSUBB:TC29034_G_AT Splicing factor 3b, subunit 1 (Sf3b1), mRNA mm
MU19KSUBC:TC34965_S_AT Splicing factor 3b, subunit 1 (Sf3b1), mRNA mm
MU19KSUBC:TC37230_AT Splicing factor 3b, subunit 1 (Sf3b1), mRNA mm
MU19KSUBC:TC37230_G_AT Splicing factor 3b, subunit 1 (Sf3b1), mRNA mm
MU19KSUBC:TC37231_I_AT Splicing factor 3b, subunit 1 (Sf3b1), mRNA mm
MU19KSUBC:TC38194_AT Splicing factor 3b, subunit 1 (Sf3b1), mRNA mm
MU19KSUBC:TC38194_G_AT Splicing factor 3b, subunit 1 (Sf3b1), mRNA mm
MU19KSUBC:TC40469_AT Splicing factor 3b, subunit 1 (Sf3b1), mRNA mm
RG-U34B:RC_AI060207_AT splicing factor 3b, subunit 1 rn
RG-U34C:RC_AI072193_AT splicing factor 3b, subunit 1 rn
RAE230A:1390234_AT splicing factor 3b, subunit 1 rn
RAT230_2:1390234_AT splicing factor 3b, subunit 1 rn
RAE230A:1373887_AT splicing factor 3b, subunit 1 rn
RAT230_2:1373887_AT splicing factor 3b, subunit 1 rn
RAE230A:1389840_AT splicing factor 3b, subunit 1 rn
RAT230_2:1389840_AT splicing factor 3b, subunit 1 rn
RG-U34A:D84487_AT Splicing factor 3b, subunit 1 rn
Protein Similarities
Method ID Description E-Value
blast CAA90777 Hypothetical protein T08A11.2 [Caenorhabditis elegans] emb|CAA90775.1| Hypothetical protein T08A11.2 [Caenorhabditis elegans] ref|NP_497853.1| T08A11.2 [Caenorhabditis elegans] 0.0
blast CAE73714 Hypothetical protein CBG21228 [Caenorhabditis briggsae] 0.0
blast XP_623732 PREDICTED: similar to ENSANGP00000019328 [Apis mellifera] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010704 EMBL-EBI Splicing factor 3B subunit 1 9.5E-65
Sequence
Target Sequence 
>C. ELEGANS:183604_AT
agctccgtgtgtgtacaacagtcgccattgccattgtttcggaaacttgtgccccattta
cagtacttccagcaattatgaacgagtatcgtgtacctgaaattaatgtacaaaacggag
ttttaaaagctctttcattcatgttcgaatacattggagaaatggcaaaagactacattt
atgcagttgttccgctgctcattgatgcattaatggaaagagatcaagttcatcgtcaga
ttgcagtcgacgcagttgctcatcttgctattggagtttatggatttggttgtgaagatg
cacttattcatttattgaattatgtgtggcccaatatgttggaaaactcaccgcatctta
ttcaacgatgggtgtttgcatgtgaaggaatgcgagtttcgttgggacctattaaggttc
ttcaatattgcctgcaagctctttggcatccagcgagaaaagttcgagaaccagtgtgga
aggtcttcaacaacctaattcttggctccgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTCCGTGTGTGTACAACAGTCGC 237 81 3386 Antisense
GTCGCCATTGCCATTGTTTCGGAAA 300 475 3406 Antisense
AACTTGTGCCCCATTTACAGTACTT 397 133 3429 Antisense
AAAAGCTCTTTCATTCATGTTCGAA 40 133 3510 Antisense
TGTTCCGCTGCTCATTGATGCATTA 319 561 3573 Antisense
GTCAGATTGCAGTCGACGCAGTTGC 453 463 3620 Antisense
ACGCAGTTGCTCATCTTGCTATTGG 406 89 3635 Antisense
GAAAACTCACCGCATCTTATTCAAC 395 355 3727 Antisense
ATGCGAGTTTCGTTGGGACCTATTA 191 41 3775 Antisense
AAGCTCTTTGGCATCCAGCGAGAAA 473 149 3821 Antisense
TCAACAACCTAATTCTTGGCTCCGC 302 629 3872 Antisense
Sequence Source Affymetrix Proprietary Database