[Home] | [Total List]

[183603_at]

Description F23B12.3 /REP_DB=WormBase Gene ID /WP=CE09595 /TR=Q19750 /GB=CAB01165.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 71      6grp_total > 02      4grp_total > 59      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 599
1 2 3 4 range
A 417.5
(0.1)
P 		590.1
(1.9)
P 		692.8
(3)
P 		114.7
(-3)
P 		578
B 389.3
(0.5)
P 		591.5
(3)
P 		543.1
(2.4)
P 		97.8
(-3)
P 		494
C 379.9
(0.3)
P 		600.1
(2.8)
P 		619.5
(3)
P 		94.1
(-3)
P 		525
avr 395.6
(0.4) 		593.9
(2.7) 		618.5
(3) 		102.2
(-3) 		516

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 289
1 2 3 4 5 6 range
A 326.1
(0.8)
P 		414.4
(3)
P 		273.8
(-0.5)
P 		279.5
(-0.4)
P 		338.2
(1.1)
P 		175.7
(-3)
P 		239
B 292
(-0.2)
P 		434.4
(2.9)
P 		272.5
(-0.6)
P 		294.6
(-0.1)
P 		437.3
(3)
P 		164.5
(-3)
P 		273
C 270.6
(-0.4)
P 		398
(2.4)
P 		218.3
(-1.5)
P 		304.7
(0.4)
P 		428
(3)
P 		148.3
(-3)
P 		280
avr 296.2
(0.2) 		415.6
(3) 		254.9
(-0.8) 		292.9
(0.1) 		401.2
(2.7) 		162.8
(-3) 		253
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 200
1 2 3 4 range
A 152
(1.9)
P 		128.1
(1.1)
P 		181.1
(3)
P 		16.8
(-3)
P 		164
B 124.1
(1.9)
P 		146.1
(3)
P 		125.8
(2)
P 		20.8
(-3)
P 		125
C 125.7
(0.3)
P 		172.5
(1.7)
P 		215.9
(3)
P 		15.9
(-3)
P 		200
avr 133.9
(1.5) 		148.9
(2) 		174.3
(3) 		17.8
(-3) 		157

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 60.1
(-2)
P 		147.4
(3)
P 		59.6
(-2)
P 		70.9
(-1.4)
P 		102.1
(0.4)
P 		42.8
(-3)
P 		105
B 101.6
(-0.9)
P 		144.6
(1.3)
P 		66.2
(-2.8)
P 		78
(-2.1)
P 		177.7
(3)
P 		61.4
(-3)
P 		116
C 100.3
(0.4)
P 		121.4
(1.8)
P 		55.6
(-2.6)
P 		61.3
(-2.2)
P 		138.5
(3)
P 		49.7
(-3)
P 		89
avr 87.3
(-0.5) 		137.8
(2.9) 		60.5
(-2.4) 		70.1
(-1.7) 		139.4
(3) 		51.3
(-3) 		88
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183603_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14513
Sequence Type Exemplar sequence
Representative Public ID F23B12.3 NCBI
Target Description F23B12.3 /REP_DB=WormBase Gene ID /WP=CE09595 /TR=Q19750 /GB=CAB01165.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074176(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074176 NCBI Caenorhabditis elegans F23B12.3 (F23B12.3) mRNA, complete cds. 11/11 None
SNAP00000025803 ENSEMBL cdna:SNAP chromosome:CEL140:V:14443739:14445004:1 11/11 None
GENEFINDER00000025812 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14443739:14445004:1 11/11 None
F23B12.3.2 ENSEMBL cdna:known chromosome:CEL140:V:14443727:14445005:1 gene:F23B12.3 11/11 None
F23B12.3.1 ENSEMBL cdna:known chromosome:CEL140:V:14443729:14445005:1 gene:F23B12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14443831-14445004(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F23B12.3
Entrez Gene 3564960 Entrez gene
SwissProt Q19750 EMBL-EBI
WormBase CE09595 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01165 Hypothetical protein F23B12.3 [Caenorhabditis elegans] ref|NP_506577.1| F23B12.3 [Caenorhabditis elegans] 1.0E-109
blast CAE60899 Hypothetical protein CBG04614 [Caenorhabditis briggsae] 1.0E-107
Sequence
Target Sequence 
>C. ELEGANS:183603_AT
cagggaggtcttcaactttcaacaccgccatatgaaattgcagttgatcagaagtgttac
tggaggaatcaaccaattgggttgacactccaagggcataacgagtcaatctggttcaag
ggattcgtaattcaaccattcaaatggaacaatgatcagctcggagaacgattcggacaa
cttgtgagacttgatgataatggatcctggcagcagcaatgcttcagatatcaagtctca
gctacacattctcacgatgaaaagaagaagcatatcaagatgtggtggaaggttgatgat
gaagtggatactgtacagtttgtagcaactgtcgtgaagcatcaaacccaattctgggtg
aaatccgtccgatcccgtccactcccaccatgccgtctaaaccgtgacggatttcccaat
taccaggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGGGAGGTCTTCAACTTTCAACAC 152 167 40 Antisense
ACACCGCCATATGAAATTGCAGTTG 415 109 61 Antisense
GGGTTGACACTCCAAGGGCATAACG 629 495 118 Antisense
GGGCATAACGAGTCAATCTGGTTCA 22 493 133 Antisense
GATCAGCTCGGAGAACGATTCGGAC 464 421 193 Antisense
GGATCCTGGCAGCAGCAATGCTTCA 189 513 241 Antisense
ATCAAGTCTCAGCTACACATTCTCA 279 27 269 Antisense
TTGTAGCAACTGTCGTGAAGCATCA 208 665 359 Antisense
GTGAAGCATCAAACCCAATTCTGGG 560 481 373 Antisense
ATTCTGGGTGAAATCCGTCCGATCC 351 9 390 Antisense
GTGACGGATTTCCCAATTACCAGGC 292 477 443 Antisense
Sequence Source Affymetrix Proprietary Database