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[183602_at]

Description C43H6.2 /REP_DB=WormBase Gene ID /WP=CE06953 /TR=Q18588 /GB=AAA96087.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 21      4grp_high_8_8 > 45      6grp_total > 22      4grp_total > 58      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 123.7
(-2.7)
P 		140.3
(-0.3)
P 		162.8
(3)
P 		121.5
(-3)
A 		41
B 154.8
(0.8)
P 		172.2
(2.3)
P 		180.6
(3)
P 		111.4
(-3)
P 		69
C 169.2
(-2.3)
P 		210
(3)
P 		163.7
(-3)
P 		171.7
(-2)
P 		46
avr 149.2
(-0.8) 		174.2
(3) 		169
(2.2) 		134.9
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 119.8
(0.6)
P 		149.4
(3)
P 		138.1
(2.1)
P 		142.3
(2.4)
P 		88.7
(-2)
P 		76
(-3)
A 		73
B 139.4
(0.8)
P 		138.3
(0.7)
P 		171.9
(3)
P 		144.6
(1.2)
P 		100.4
(-1.8)
P 		82.7
(-3)
M 		89
C 165
(2.5)
P 		172.5
(3)
P 		135.3
(0.6)
P 		143.9
(1.2)
P 		114.3
(-0.7)
P 		78.4
(-3)
P 		94
avr 141.4
(2) 		153.4
(3) 		148.4
(2.6) 		143.6
(2.2) 		101.1
(-1.2) 		79
(-3) 		74
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 45
(3)
P 		30.5
(-0.2)
P 		42.6
(2.5)
P 		17.8
(-3)
A 		27
B 49.4
(3)
P 		42.5
(1.4)
P 		41.9
(1.2)
P 		23.7
(-3)
P 		26
C 56
(2.2)
P 		60.4
(3)
P 		57.1
(2.4)
P 		28.9
(-3)
P 		32
avr 50.1
(3) 		44.5
(1.7) 		47.2
(2.3) 		23.5
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 22.1
(-2.4)
P 		53.1
(3)
P 		30.1
(-1)
P 		36.1
(0.1)
P 		26.8
(-1.6)
P 		18.5
(-3)
A 		35
B 48.5
(3)
P 		46
(2.2)
P 		41.7
(0.7)
P 		38.3
(-0.5)
P 		40.8
(0.4)
P 		30.8
(-3)
M 		18
C 61.2
(3)
P 		52.6
(1.5)
P 		34.4
(-1.6)
P 		28.9
(-2.5)
P 		37
(-1.1)
P 		26.2
(-3)
P 		35
avr 43.9
(1.4) 		50.6
(3) 		35.4
(-0.6) 		34.4
(-0.8) 		34.9
(-0.7) 		25.2
(-3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183602_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18388
Sequence Type Exemplar sequence
Representative Public ID C43H6.2 NCBI
Target Description C43H6.2 /REP_DB=WormBase Gene ID /WP=CE06953 /TR=Q18588 /GB=AAA96087.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076038(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076038 NCBI Caenorhabditis elegans C43H6.1 (C43H6.1) mRNA, complete cds. 11/11 None
GENEFINDER00000018909 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2409672:2412258:1 11/11 None
C43H6.1 ENSEMBL cdna:known chromosome:CEL140:X:2409705:2412960:1 gene:C43H6.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018905 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2409704-2410481(+) 95.9 100.0
Public Domain and Genome References
Gene Title
Ensembl C43H6.1
Entrez Gene 180546 Entrez gene
SwissProt Q5WRR4 EMBL-EBI
WormBase CE37619 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAV28361 Hypothetical protein C43H6.1 [Caenorhabditis elegans] ref|NP_508439.2| C43H6.1 [Caenorhabditis elegans] 0.0
blast T29994 hypothetical protein C43H6.1 - Caenorhabditis elegans 1.0E-137
blast T29994 hypothetical protein C43H6.1 - Caenorhabditis elegans 1.0E-120
blast T29993 hypothetical protein C43H6.2 - Caenorhabditis elegans 4.0E-63
Sequence
Target Sequence 
>C. ELEGANS:183602_AT
atgctgaattatgcctacgaggacaaaaaacacctactgtactggccagaatcagttaga
ttgaaatccacaaaaccagatgctcgaggaacaatgcaatatacaatgccgggtatcaag
gaagactttattcgtagtccaattgaacatcgttaccaagacacgttcaacaaatttttt
ccctcctacgaccttgaccttaatcagcgagggttgatatggtttcttaaaaaaggcctt
ttggaagcagctttaaatggaacatctgatatgctgacatggctaggacaaggaaaagat
aaagctggaaggccgtcggaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTGAATTATGCCTACGAGGACA 366 41 13 Antisense
AACACCTACTGTACTGGCCAGAATC 187 137 41 Antisense
AAAACCAGATGCTCGAGGAACAATG 507 129 84 Antisense
CAATGCCGGGTATCAAGGAAGACTT 280 177 116 Antisense
GTAGTCCAATTGAACATCGTTACCA 260 457 146 Antisense
ACATCGTTACCAAGACACGTTCAAC 264 99 159 Antisense
TCCTACGACCTTGACCTTAATCAGC 495 277 196 Antisense
CAGCGAGGGTTGATATGGTTTCTTA 315 203 217 Antisense
GGAACATCTGATATGCTGACATGGC 522 529 271 Antisense
TATGCTGACATGGCTAGGACAAGGA 242 655 282 Antisense
GATAAAGCTGGAAGGCCGTCGGAAA 171 419 310 Antisense
Sequence Source Affymetrix Proprietary Database